Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1925 ATGTCATGCTCAACACCTGCTCGTAAGTTGattaatgtgataaagaggaagaggaaagcaATAAAGGAATTTCTTAAGAAGGACATCGCGAAGGATTGGAAGGGGCTGAGGGTCACTATGAAGCTCATCATGAAGAACCATCTGGCAAAGGTCATGGTGGTTCCCTTTGTAGTGGCTTTCATCATTAAGGCCTCGAAGGACCTTGAAAGCGACTGCGTAACGATGAAGAACAAGGAATCTACCGAGATCAAATATGTTGATGTCATAGTGGAGGAACTTTGCCATCACCCTAACAATGCTACATTTTTCGGTACTAGACACAAAATGGTGGAGAAGAAGCCAAAGATGCCAATGACAAAataa 363 0.3967 MSCSTPARKLINVIKRKRKAIKEFLKKDIAKDWKGLRVTMKLIMKNHLAKVMVVPFVVAFIIKASKDLESDCVTMKNKESTEIKYVDVIVEELCHHPNNATFFGTRHKMVEKKPKMPMTK 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1925 120 PANTHER 60S RIBOSOMAL PROTEIN L12 14 89 IPR000911 GO:0003735|GO:0005840|GO:0006412
Ssu6g1925 120 PANTHER 60S RIBOSOMAL PROTEIN L12-3 14 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1925 Ssu-Chr6 34395233 34396120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1925 19 89 Cytoplasmic Ribosomal Protein Gene Family AT5G60670 50.000 1.49e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1925 K02870 - smo:SELMODRAFT_227409 65.4698