Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1922 ATGGCTATGGTTCTGGACGCCGTTGCCGGAAAAGTGATTGATGAACTGCTGAGTGCGGTTGTGGAAATGAAAGACAGGGCCGTGAAGTTCAAACCCACCCTGGAACGCTTGGAGTCCACACTCAAATCAATAGAACCATTGGCGAAGCAAATTGATGGTCTTAACAAGCGGTTGGATCGACCCGCTGAGGAAACGAAGAAGCTGATCGATCAGATGGAGAGGGGGAAGAAGCTTGTTCTCAAGTGCTCCAAAGTGCAGTGGTGGAATTGCTGCCATAAGGCCAACTACCAAGAGGAACTTCAAGACTTGGACGATTCTATTGTTAGGTTCTTTAATTTGGATATGCAGGCTCAGACTAACAGGAACGGGTTGGAGATCCTGGTGGAGGTGAGGGATATTCATGCGGAGCTTAGGAATATTGCTCCGAGAAGGACTGAATTGAGGCGCGTGTGTTCGCCTCCTGAACCCCCTGCTTTCACTGTTGGGTTGGATGTTCATTTGATGGAGTTGAAGCTGAGGTTGCTGAAGGACCATCATAAGGGGTCGGTGCTCACCGTGACCGGAACAGGAGGTTCGGGCAAGTCTACGTTGGCCAAAAAGTTTTGCTGGGACGAGGATGTGAAAGGTAAATTCAAGGAAAACATATTCTTCTTCCCCTTTGCGAGAACGCCCAAGTTGATTACCATTGTGGAGAGACTATTTCAACACACCGGTACCCAAATGCCAGACTTGCAAAGTGATGATGATGCGGCTAACCAATTGGAACATTTGCTAAATCAGATTGGGGAAAGCCCAATATTGTTGGTTCTCGATGATGTTTGGCCCGAATCAGTATCTCTTGTTCATAAATTCGCGTTCCAAATCCCAAACTACGTGATTTTAATGACATCAAGAGTCGCAATTAGAGAATTTGACCCTGCATATGTCTTGAAACCCCTTGATGAAGTCAATGCTATGAATCTATTTTGCGACTCAGCATCCCTAAATCCGAGCAGCTCTCATATTCCGGAAAATGTTGTTAACGAGATAGTGAGAGGGTGTAGTGGCTTTCCCTTGGCACTTACAGTGATTGGCGGAAATCTAAGACATCAACAACCGTTGGTTTGGAAAAACATGGCGAGGAAATTGTCCACGGGTCATTCTATTCTTGATTCTAGTCAGTATGTGCTTGATTGTCTCCAGAAAAGCTTCGATGTTTTGGATGCTAAGGTGGCTGAGTGTTTTAGGGACCTAGGTTTATTTCCTGAAGCCCAGAGGATCCCCGCTGCTGCCCTTGTTGATATGTGGGCAGAACTGCACGATGAAGATGATGACAGTGCAATGGAGAACATCTATAAACTGGTCGATCGGAACTTGGCTGATGTTGTTGTCACAAGGTAtaccaaatattttttgtgttga 1401 0.4554 MAMVLDAVAGKVIDELLSAVVEMKDRAVKFKPTLERLESTLKSIEPLAKQIDGLNKRLDRPAEETKKLIDQMERGKKLVLKCSKVQWWNCCHKANYQEELQDLDDSIVRFFNLDMQAQTNRNGLEILVEVRDIHAELRNIAPRRTELRRVCSPPEPPAFTVGLDVHLMELKLRLLKDHHKGSVLTVTGTGGSGKSTLAKKFCWDEDVKGKFKENIFFFPFARTPKLITIVERLFQHTGTQMPDLQSDDDAANQLEHLLNQIGESPILLVLDDVWPESVSLVHKFAFQIPNYVILMTSRVAIREFDPAYVLKPLDEVNAMNLFCDSASLNPSSSHIPENVVNEIVRGCSGFPLALTVIGGNLRHQQPLVWKNMARKLSTGHSILDSSQYVLDCLQKSFDVLDAKVAECFRDLGLFPEAQRIPAAALVDMWAELHDEDDDSAMENIYKLVDRNLADVVVTRYTKYFLC 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1922 466 Gene3D - 313 401 IPR042197 -
Ssu6g1922 466 PANTHER LRR AND NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 1 459 - -
Ssu6g1922 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 411 IPR027417 -
Ssu6g1922 466 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 7 138 IPR008808 -
Ssu6g1922 466 PRINTS Disease resistance protein signature 183 198 - -
Ssu6g1922 466 PRINTS Disease resistance protein signature 260 274 - -
Ssu6g1922 466 PRINTS Disease resistance protein signature 347 361 - -
Ssu6g1922 466 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Ssu6g1922 466 Gene3D - 142 303 IPR027417 -
Ssu6g1922 466 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 1 459 IPR039203 GO:0050832
Ssu6g1922 466 Pfam NB-ARC domain 166 397 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1922 Ssu-Chr6 34224493 34253240 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1922 161 420 WRKY Transcription Factor Family AT5G45050 21.481 1.21e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1922 - - gmx:100812310 586.645