Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1920 ATGGCGAGAACGCCCAAGTTGATTACCATAGTGCAGAGACTATTTCAACACACTGGTACCCAAATGCCAGACTTTCAAAGTGATGATGATGCGGCTAACCAATTGGAAATTTTGCTAAGACAGAGGAATTGCCCAATATTGTTGGTTCTCGATGATGTTTGGCCCGAGTCAGTATCTCTTGTTGACAAATTTGTGTTCCAGATCCCAAactatatgattttaatgacaTCAAGAGTCAAAATTCGAGAATTTGACCCTGCATATGTCTTGAAACCCCTTGATGAAGTCAATGCTATGAATCTATTTTGCCACTCAGCATCCCTAAATCAGAGCAGATCTCATATTTCTGATGACGTTGTCCAAAAGATAGTGAAAGGGTGCAGTGGTTTTCCCTTGGCACTTACAGTGATTGGCAGAAATCTAAAGCATCAAGAACTGATTGGTTGGGACAACATGGCGGAGAAACTGTCCACGGGTCATTCTATTCTTGATTCTAATGACTACGTGCTTAATTGTCTCCAGAAAAGCTTCGATGTTTTAGATGCTAAGGTGGCTGAGTGTTTTAGGGACCTAGGTTTATTTCCTGAAGCCCAGAGGATCCCCGCTGCTGCCCTTGTTGATATGTGGGCAGAACTGCACGATGAAACTGATAGCAGTGCAATGGGGAAGATCCATGAACTGTTCTACCGGAACATGGCTGATATTGTTGTCACAAGGAATATTACAAGTGGCACAGGTGACTACAATTACCACTATGTTACACAGCATGGTCTTCTTCGAGACCTAGCTATCCTTCAAACTAGCCAGGGGCCACAGGAGAACAGGAATAGACTAATTATTGACATTAGTGGGAACAATCTTCCCAAGTGGTGGAGTACACAGAATGAGTATCACATTGCAGCCCGCATACTATCCATATCAACGGTTGAGCTCTTTGATATTGTTTCCTTAAAGAAGGTCAGTATTACAAACTGCCATAAGCTTTCTGCACTTCCTGAAGGAATTGAAAAGCTGGTCAATTTGGAATCACTAAGGCTTACTTCCTGTACTAGTTTAGAAGAGTTGCCAGACTCGATCACAAGCCTTCATGAACTGAAATTTCTTGATATCTCTGACTGCGTAAGCCTTAGTAAGTTACCTGAGAACTTGGAGGGGTTGCGTAGTTTAGAAAGGCTCAATTGCAGAGGTTGCACGATATTTACCAGGTTGCCACACAAAATCACGGACCTTGGGGGCTTAAGGGTTTTGGAATGTGATGAAGAGACGGCTGCATCATTGGAGCATCTTAGAACCATGCTTAGTCGTCTAACGCTAAAGGTGGCCCAAGTTGAATTCAACTTAAATTGGCTTTCATCATAA 1359 0.4231 MARTPKLITIVQRLFQHTGTQMPDFQSDDDAANQLEILLRQRNCPILLVLDDVWPESVSLVDKFVFQIPNYMILMTSRVKIREFDPAYVLKPLDEVNAMNLFCHSASLNQSRSHISDDVVQKIVKGCSGFPLALTVIGRNLKHQELIGWDNMAEKLSTGHSILDSNDYVLNCLQKSFDVLDAKVAECFRDLGLFPEAQRIPAAALVDMWAELHDETDSSAMGKIHELFYRNMADIVVTRNITSGTGDYNYHYVTQHGLLRDLAILQTSQGPQENRNRLIIDISGNNLPKWWSTQNEYHIAARILSISTVELFDIVSLKKVSITNCHKLSALPEGIEKLVNLESLRLTSCTSLEELPDSITSLHELKFLDISDCVSLSKLPENLEGLRSLERLNCRGCTIFTRLPHKITDLGGLRVLECDEETAASLEHLRTMLSRLTLKVAQVEFNLNWLSS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1920 452 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 2 312 IPR039203 GO:0050832
Ssu6g1920 452 SUPERFAMILY L domain-like 278 425 - -
Ssu6g1920 452 Gene3D Ribonuclease Inhibitor 256 437 IPR032675 -
Ssu6g1920 452 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 311 451 IPR039203 GO:0050832
Ssu6g1920 452 Gene3D - 2 83 IPR027417 -
Ssu6g1920 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 191 IPR027417 -
Ssu6g1920 452 Pfam NB-ARC domain 10 178 IPR002182 GO:0043531
Ssu6g1920 452 PRINTS Disease resistance protein signature 127 141 - -
Ssu6g1920 452 PRINTS Disease resistance protein signature 360 376 - -
Ssu6g1920 452 PRINTS Disease resistance protein signature 40 54 - -
Ssu6g1920 452 PANTHER LRR AND NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 2 312 - -
Ssu6g1920 452 PANTHER LRR AND NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 311 451 - -
Ssu6g1920 452 Gene3D - 93 185 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1920 Ssu-Chr6 34183438 34186939 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1920 311 417 WRKY Transcription Factor Family AT4G12020 31.776 7.89e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1920 - - gmx:100812310 422.165