Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1918 ATGTTGTTGGTCCTGGATGATGTTTGGCCTGGCTCAGAAGACCTTGTTGAGAAATTTAAAGTCCAGATAccagattataaaattttggtaacaTCTAGGGTTGCATTTCCTAGATTTGGCACCCAGTGTATCTTAAAACCACTTGTTCACAAAGATGCAATAACCCTTTTCCGACATTATGCTCTCTTGGACAAAAGCGGTTCAAGTATTCCTGATGAAGAACTTGTCCAAAAGGTTGTGAGAAACTGCAGGGGTTTACCACTTGCCATCAAAGTGATTGGGAGATCACTCAGTCGTCAGCCTTCTGAGTTGTGGGTAAAGATGATGGAGGAATTGTCACAGGGTCATTCTATACTTGATTCTAATACTGAACTACTTACATACCTCCAAAAGATCTTGGATGTTTTGGAAGATAATTCTGTCAACAAGGAGTGCTTCATGGACCTAGGGTTGTTTCCTGAAGACCAAAGAATTCCTGTTACTGCTCTCATTGACATGTGGGCAGAGTTGTATGGACTAGATGACAATGGCATAGAGGCAATGACCATCATCAACAAATTAGACACCATGAATCTGGTTAATGTCTTGGTAGCGAGGAAAAATGCTAGTGACACAGACAATCACTACTACAATAACCACTTCATCGTCCTTCATGACCTTTTGAGAGAGCTTGCAATTTATCAAAGCACCCAGGAACGAATGGAACAGAGAAAAAGATTGAATTTTgagataaatcaaaataaacccGCGTGGTGGCTTGGGGAGAAGTCAAAATTGCTTGGATGGTGTGTTGAACAAAAGCCCCAACAGGCCGCTGCCCACACATTGTCTATATCAACTGATGAAAGTTGCACTTCATATTGGCCCCAAATGCAACTATCTCAAGTTgaggttttgatttttaatcttCGAAATAAGCAGTATTCCTTTCCAGATTTCATGGAAGAAATGAATAAACTTAAAGTTCTGATTGTCACAAGTTACAGTTTCTATCCTTCTAAAATGAACAATTTTGAGCTACTTGGCTCTTTATCCAACCTGAAAAGAATCAGACTAGAGAGGATTTCTGTTCCTTCCTTTGTGACAATGAAGAATCTTAAAAAGTTATCTCTCTACTTGTGTAGTATGAGACAGGCTTTTGAAAACGGTGACATACTAATTTCAGATGCTTATCCAAATCTAGAAGAGTTGAATATTGACTATTGCAAAGATATGGTGGGATTGCCTAAGGGGTTCTGCGATATCATCCCCCTGAAGAAGCTTAGTATTACTAATTGCCACAAACTTTCTGCACTGCCTCAAGAAATTGGAAAGTTGGAGAAATTGGAACTCCTAAGGCTCAATTCCTGTACTGATTTGGAAGGGATACCAGATTCTGTTGGAAGGCTTTCAAATCTAAAACTTCTTGACATCTCAAATTGCATAAGCCTTCCTAATTTACCGGAGGACTTTGGTAATCTGTCTAATCTACAAAACCTCTACATGACAAGTTGTGCAAGGTGTGAATTACCATTCTCAGTCACTAATCTTGAGAATTTAAAGGTAGTGATATGCGATGAAGAGACAGCTGCATCATGGGAACCGTTCAAACCTATGCTTCCCAATCTAAAGATAGATGTTCCTCAAGTTAATGTCAACTTGAATTGGCTTCATACAATTTCCTCCTAA 1668 0.3813 MLLVLDDVWPGSEDLVEKFKVQIPDYKILVTSRVAFPRFGTQCILKPLVHKDAITLFRHYALLDKSGSSIPDEELVQKVVRNCRGLPLAIKVIGRSLSRQPSELWVKMMEELSQGHSILDSNTELLTYLQKILDVLEDNSVNKECFMDLGLFPEDQRIPVTALIDMWAELYGLDDNGIEAMTIINKLDTMNLVNVLVARKNASDTDNHYYNNHFIVLHDLLRELAIYQSTQERMEQRKRLNFEINQNKPAWWLGEKSKLLGWCVEQKPQQAAAHTLSISTDESCTSYWPQMQLSQVEVLIFNLRNKQYSFPDFMEEMNKLKVLIVTSYSFYPSKMNNFELLGSLSNLKRIRLERISVPSFVTMKNLKKLSLYLCSMRQAFENGDILISDAYPNLEELNIDYCKDMVGLPKGFCDIIPLKKLSITNCHKLSALPQEIGKLEKLELLRLNSCTDLEGIPDSVGRLSNLKLLDISNCISLPNLPEDFGNLSNLQNLYMTSCARCELPFSVTNLENLKVVICDEETAASWEPFKPMLPNLKIDVPQVNVNLNWLHTISS 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1918 555 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 149 IPR027417 -
Ssu6g1918 555 PRINTS Disease resistance protein signature 83 97 - -
Ssu6g1918 555 PRINTS Disease resistance protein signature 461 477 - -
Ssu6g1918 555 SUPERFAMILY L domain-like 275 520 - -
Ssu6g1918 555 Gene3D - 130 226 IPR036388 -
Ssu6g1918 555 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 1 541 IPR039203 GO:0050832
Ssu6g1918 555 Pfam NB-ARC domain 2 133 IPR002182 GO:0043531
Ssu6g1918 555 Coils Coil 217 237 - -
Ssu6g1918 555 Gene3D - 48 129 IPR042197 -
Ssu6g1918 555 Gene3D Ribonuclease Inhibitor 264 531 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1918 Ssu-Chr6 34063901 34066250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1918 304 513 WRKY Transcription Factor Family AT4G12020 26.512 8.73e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1918 - - gmx:100809435 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2455 2 82938788 82939665 Ssu6g1918 6 34063901 34066250 PCT