Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1915 ATGGATCGGGGGGCGTTGACGGTTGGACCGGGCATGGACATGCCGATCATGCACGACAGCGACCGTTACGATCTGGTCCGCGACATCGGGTCCGGGAATTTCGGCGTGGCGAGGCTGATGCAGGATAAACAGACCAAGGAACTCGTTGCCGTGAAATATATCGAAAGGGGTGATAAGATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGACATCCGAACATTGTTAGGTTTAAAGAgGTAATTTTAACACCTACTCATCTTGCCATTGTGATGGAATATGCATCTGGAGGAGAGCTGTTTTTGCGAATCTGCAATGCTGGGCGTTTTACTGAGGATGAgGCTCGATTCTTCTTTCAACAGCTCATATCTGGGGTCAGCTATTGCCATGCTATGCAAGTATGTCATCGGGACTTGAAGCTGGAAAACACTCTGCTGGATGGAAGCCCGGCACCTCGTTTGAAGATATGCGATTTTGGGTACTCTAAGTCCTCAGTGCTTCATTCACAACCAAAGTCTACTGTGGGAACTCCTGCATATATTGCTCCAGAAGTATTGCTGAAACAAGAGTATGACGGCAAGATCGCAGATGTCTGGTCATGTGGAGTAACCTTATATGTGATGCTAGTGGGAGGATATCCTTTTGAAGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAGAGAATTCTTAGTGTCCAGTATTCCATTCCAGACTGTGTTCAAATATCTCCAGAGTGTCGCCACCTTATCTCaaggatttttgtttttgacccaGCGGAGAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTCCTGAAGAATCTCCCTGCGGACCTGATGGATGAGAAGATAATGAGTAATAAGTTTGAAGAGCCAGACCAACCCATGCAGAGCATTGATACGATCATGCAGATAATTTCAGAAGCTACCGTACCAGCGGCTGGGAACTATACTTTTGACCATTTTATGGGggagaaattttatgaattagaaTCTGAATCTGATGCTGAATCTGAGCTTGATATAGATAGCAGTGGGGAGATAGTGTATGCCATATAA 1083 0.4349 MDRGALTVGPGMDMPIMHDSDRYDLVRDIGSGNFGVARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFLRICNAGRFTEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLYVMLVGGYPFEDPNEPKDFRKTIQRILSVQYSIPDCVQISPECRHLISRIFVFDPAERITMSEIWNHEWFLKNLPADLMDEKIMSNKFEEPDQPMQSIDTIMQIISEATVPAAGNYTFDHFMGEKFYELESESDAESELDIDSSGEIVYAI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1915 360 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1915 360 SUPERFAMILY Protein kinase-like (PK-like) 16 316 IPR011009 -
Ssu6g1915 360 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 14 354 - -
Ssu6g1915 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Ssu6g1915 360 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Ssu6g1915 360 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1915 360 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Ssu6g1915 360 Gene3D Transferase(Phosphotransferase) domain 1 99 286 - -
Ssu6g1915 360 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1915 360 PANTHER SERINE/THREONINE KINASE 14 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1915 Ssu-Chr6 33618128 33622560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1915 22 289 CBL-interacting serine-threonine protein kinases AT4G24400 43.321 1.02e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Ssu6g1915 Pkinase 2.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1915 K14498 - gmx:100806949 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1915 6 33618128 33622560 Ssu2g2457 2 82945747 82959500 PCT