Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1914 ATGGAGATGCTAATGTCAACGCGAACTCCCCCCTGCGGCGCGTGCAAGTACCAGCGTCGGAGGTGTGGGCCAGACTGCGTGTTCGCGCCGCACTTTCCGACGGAGAGCATTCAGAAGTTCGCGTGCGTGCACCACGTGTTCGGCGCGAGCAACGTGGGGACCATTCTGAAGTCTCTGCAACCGGAGATGCGCGAGTCGGCGGCGAAGACGCTGGCGTACCAGGCGGAGGCGCGCGTGAGGGACCCCGTGCACGGCTGCGTGGGCCTCATCGCGGAGCTGGAAGAGCGGCACCGCCGGGTCAAGGAGGACCTCCTCAAGGCCCAGACGGAGCTGGCCCAGTTCGTGAGCCCAGAGGCCATGCGCGAGATGTGTCCCCGCTTTGGCCCGTCTTTGAAGCGTAAAAAACCTGTGCCGCCTCCGGTTCTGGTGGAGCTGGACGCTGCCTCGTTCCCCGTTCTCTGCGGTGACGCTGAGCTTGAGAAGTGGGACCCTTTTCCGCCTTGGGGAACTTTTCAGAAAATCAAGGCTGCTACTTCTTCTCAGATGCATGAAGATAAGAAGCGTAAGAGCGTCGCTCCTCCTTCTTGA 588 0.619 MEMLMSTRTPPCGACKYQRRRCGPDCVFAPHFPTESIQKFACVHHVFGASNVGTILKSLQPEMRESAAKTLAYQAEARVRDPVHGCVGLIAELEERHRRVKEDLLKAQTELAQFVSPEAMREMCPRFGPSLKRKKPVPPPVLVELDAASFPVLCGDAELEKWDPFPPWGTFQKIKAATSSQMHEDKKRKSVAPPS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1914 195 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Ssu6g1914 195 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Ssu6g1914 195 Coils Coil 90 110 - -
Ssu6g1914 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 9 135 - -
Ssu6g1914 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 135 - -
Ssu6g1914 195 MobiDBLite consensus disorder prediction 176 195 - -
Ssu6g1914 195 MobiDBLite consensus disorder prediction 179 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1914 Ssu-Chr6 33549450 33550037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1914 5 120 AS2 family AT5G66870 54.310 1.56e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu6g1914 LOB 7.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1914 - - gmx:102663028 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1914 6 33549450 33550037 Ssu2g2462 2 83089428 83090333 PCT