Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1913 ATGTCATCGTCGAATTCACCGTGCGCGGCGTGCAAGCTTCTGCGGCGGAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCAGACAATCCGCAACGGTTCGCGTGCGTGCACCGCGTGTTCGGCGCGAGCAACGTGGCGAAGCTGCTGAACGAGCTGAGCTTGGCGCAGCGAGAGGACGCCGTTAAGTCGCTGGCGTACGAGGCGGAGGCTCGTCTGAGGGACCCCGTGTACGGCTGCGTGGGCTTCATCTCGCTGCTGCAGCAACGGCTCCGTCAAATCCAGACGGAGCTTCACAGCGCCAAGAAGGAGTTGTCCACCTACGTTAGCCCCCAGGCGATGCAGGTTCTCTTGGCCAATCCAGGGATGCTGCCACCCTCTGGGCCCCATTTGCATCAATCTGTACTTAACAATAATTGTGGCGGCAACAACGCGGGTTTCGTTGGCCACGGCGGTGGCCAGATGGTGATTCGTGACCCCCAGCAGCAGGAGTTTCTAGAAGCTCAGCAGATGGCTCTTGCGGCTAGGGAGCATcagcagcagcaacaacagcaGGTTATGCTTCGGAACTATGAGCAGCAGCAAGAGTTTATGAAGCTGAATGGTGGGTTGGagcatggtggtggtggtgggtttGGGAACCAGGTGGAGTTGTTGTCTCCTTCTTTGGCTCTCGGCGGTTTTGAGAATATTGGGTCTTACCAGATCCAACAACAAGGGGAACATGCCATCGAGGCACAATTGTTGCTATCGCCGCAGCAACAGTCACAGGAACAACCCCATCAGCATCAACAGTGTGAAAGTGAGGATGCGAGGAGCGTCGTTCCTGCTTGA 840 0.5464 MSSSNSPCAACKLLRRKCTQECVFAPYFPPDNPQRFACVHRVFGASNVAKLLNELSLAQREDAVKSLAYEAEARLRDPVYGCVGFISLLQQRLRQIQTELHSAKKELSTYVSPQAMQVLLANPGMLPPSGPHLHQSVLNNNCGGNNAGFVGHGGGQMVIRDPQQQEFLEAQQMALAAREHQQQQQQQVMLRNYEQQQEFMKLNGGLEHGGGGGFGNQVELLSPSLALGGFENIGSYQIQQQGEHAIEAQLLLSPQQQSQEQPHQHQQCESEDARSVVPA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1913 279 Coils Coil 86 106 - -
Ssu6g1913 279 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Ssu6g1913 279 MobiDBLite consensus disorder prediction 253 279 - -
Ssu6g1913 279 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Ssu6g1913 279 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 1 265 - -
Ssu6g1913 279 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1913 Ssu-Chr6 33503793 33504632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1913 1 128 AS2 family AT5G66870 75.194 1.49e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu6g1913 LOB 8.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1913 - - gmx:100796406 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2462 2 83089428 83090333 Ssu6g1913 6 33503793 33504632 PCT