Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1908 ATGATCCAGGGCGGCGACATCTCCGCCGGCGACGGCACCGGCGGGGAGTCGATCTACGGCCCGAAGTTCGAGGACGAGGGCCTGGAGCTGAAGCACGAGAGGAAGGGGATGCTCTCCATGGCGAACTCGGGGCCCAACACGAACAGCTCGCAGTTCTTCATCACCACCACGCGCACGCCGCACCTCGACGGAAAGCACGTCGTTTTCGGGAGAGTCGTCAAGGGAATGGGCGTCGTTCGCTCCGTCGAGCACGTCGTCACCGGCGACAACGACCGTCCCGTTCAGGACGTCGTGATCGTGGACTGCGGGGAAATTCCCGAAGGGGAAGATGAAGGAGTTGTTAACTTCTTTAAGGACGGTGACACTTACCCCGATTGGCCCACTGATCTTGATGTCAAACCTGATGAGCTTTCTTGGTGGATGAGTGCTGTGGATGCTATCAAAACTCTTGGGAATGAGCAGTATAAGAAGCAGGATTACAAGATGGCTCTCAGGAAGTATCGCAAAGCGTTGCGCTATTTGGATGTGTGTTGGGAGAAGGACGACATTGACCACGAGAAGAGTATTGCTTTGAGGAAGACAAAGTCTCAAATCTTTACCAACAGTTCTGCTTGTAAATTGAAAATAGGCGATCTAAAAGGAGCGTTACTGGATTCAGACTTTGCAATGCATGATGGAGATAATGCAAAAGCTCTGTTTCGCAAAGGCCAGGCATATATGTTACTCAACGACCTAGATGCTGCTGTTGAAAGCTTCAAGAAAGCATTAGAGTTGGAGCCAAATGATGGAGGGATTAAAAAAGAGTATGCCACTGCCAGGAGGAAGGTTGCTGATAGACGTGATCAAGAGAAAAAAGCTTATTCTAAAATGTTCAAGTAG 879 0.5051 MIQGGDISAGDGTGGESIYGPKFEDEGLELKHERKGMLSMANSGPNTNSSQFFITTTRTPHLDGKHVVFGRVVKGMGVVRSVEHVVTGDNDRPVQDVVIVDCGEIPEGEDEGVVNFFKDGDTYPDWPTDLDVKPDELSWWMSAVDAIKTLGNEQYKKQDYKMALRKYRKALRYLDVCWEKDDIDHEKSIALRKTKSQIFTNSSACKLKIGDLKGALLDSDFAMHDGDNAKALFRKGQAYMLLNDLDAAVESFKKALELEPNDGGIKKEYATARRKVADRRDQEKKAYSKMFK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1908 292 Pfam Tetratricopeptide repeat 229 262 IPR001440 GO:0005515
Ssu6g1908 292 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 292 - -
Ssu6g1908 292 ProSiteProfiles TPR repeat profile. 229 262 IPR019734 GO:0005515
Ssu6g1908 292 Gene3D Tetratricopeptide repeat domain 144 292 IPR011990 GO:0005515
Ssu6g1908 292 SMART tpr_5 229 262 IPR019734 GO:0005515
Ssu6g1908 292 SMART tpr_5 144 177 IPR019734 GO:0005515
Ssu6g1908 292 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 104 IPR002130 GO:0000413|GO:0003755
Ssu6g1908 292 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 103 IPR002130 GO:0000413|GO:0003755
Ssu6g1908 292 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 292 - -
Ssu6g1908 292 SUPERFAMILY TPR-like 142 289 IPR011990 GO:0005515
Ssu6g1908 292 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 79 IPR002130 GO:0000413|GO:0003755
Ssu6g1908 292 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 36 51 IPR002130 GO:0000413|GO:0003755
Ssu6g1908 292 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413|GO:0003755
Ssu6g1908 292 ProSiteProfiles TPR repeat region circular profile. 229 262 - -
Ssu6g1908 292 MobiDBLite consensus disorder prediction 1 22 - -
Ssu6g1908 292 Gene3D - 1 111 IPR029000 -
Ssu6g1908 292 SUPERFAMILY Cyclophilin-like 1 106 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1908 Ssu-Chr6 33459372 33462851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1908 1 101 U-box Gene Family AT5G67530 48.039 8.38e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1908 K05864 - gmx:100803839 552.747