Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1904 ATGGGTCTCTGCAATTCAAAGCCTCGTGCAAACCACACTCTCCCTTCTCCCAATTCCCACACCCACTACACAGACACCAATGCCAACGAACAATCACAAGACCCCACTCCCACCCCTAAAAAATCGCCGCTTTTCCCGTTCTACACTCCGAGCCCGGCCCACCGCTTTTTCTCCGGCAAGTCTCCGGCGCCGGCCACTCCCCGGCGGTTCTTCAAGCCGCCGTCGCCGGCGAAGCACATTCGGGCCGTGCTGGCCCGGCGCCACGGGTCGGTGAAGCCCAACGAGGCCACCATCCCGGAAGACGAGGTGGTTGCTCTCGACAAGAACTTCGGATTCTCGAAACAGTTTGAGCACAAGTTCGAGGTTGGGGACGAGATTGGACGAGGACACTTTGGTTACACTTGTGCTGCTAAGTTTGTTAAGGGCCAACTCAAAGGGCAAAGCGTCGCTGTCAAGGTCATCCCCAAAGCCAAGATGACCACTGCAATTGCTATTGAGGATGTGAGAAGGGAAGTGAAGATATTGAGGGCTTTGACTGGACATAAGAATCTGATTCAGTTCCACGATGCATATGAGGATAATGACAATGTCTACATAGTAATGGAGTTGTGCGAAGGAGGAGAGCTTTTGGACAGGATATTGTCGAgAGGTGGGAAATACACGGAGGAAGATGCAAAAGCTGTCATGATACAGATACTGAATGTTGTTGCGTTTTGCCATCTACAGGGTGTTGTGCATCGTGATCTTAAACCTGAGAATTTCTTGTTCACATCCAAAGGTGAGAACTCTGAGCTGAAGGCCATTGATTTTGGATTGTCAGATTTTGTCAAACCAGATGAAAGGCTTAATGACATTGTTGGTAGCGCATACTATGTGGCTCCTGAAGTTCTGCATAGAGCTTACAGTACAGAGGCTGACATCTGGAGTGTTGGTGTGattgcatatattttattatgcggCAGCCGTCCATTTTGGGCACGGACTGAATCTGGGATCTTTCGTGCCGTATTGAAAGCTGATCCAGGTTTTGATGAATCTCCTTGGCCTTCTCTATCGGATGAGGCAAAGGATTTTGTTAAGCGACTGCTAAATAAAGATCCAAGGAAAAGAATGACTGCAGCACAGGCACTAGGTCATCCgtggattaaaaattataaggatgTAAAAGTACCCCTGGATATTCTAGTGTTCAAGCTCATGAAGACATACATGCGTTCCTCCTCTCTACGGAAAGCCGCTTTAAGgGCTTTGTCTAAGACATTAGCAATTGAGGAGCTGCAGTATTTGAAGGAGCAGTTTGCACTTTTAGAGCCAAACAAAACTAACGCTATCAGCTTGGAAAATATCAAAGCGGCCTTGATGAAGAATGCAACAGATGCTATGAAGGAATCACGCATTCCTGATTTTCTTGCATCACTTAATGCATTGCAATATAGAAGGATGGCTTTTGATGAGTTCTGCGCAGCTGCACTTAGTGTTCATCAACTTGAAGCACTTGACCGGTGGGAGCAACATGCCCGCTGTGCCTATGAACTTTTTGAAAAGGATGGAAATAGGGCTATAGTCATTGAGGAACTAGCTTCGGAGCTTGGCCTTGGTCCATCCGTCCCTGTTCATGCTGTTCTTCACGACTGGATTAGGCACACTGATGGAAAGTTGAGCTTCCTTGGGTTTGTTAAATTGTTGCATGGTCCATCTCGAAGTCTTGCAAAACCTCACTAG 1722 0.4652 MGLCNSKPRANHTLPSPNSHTHYTDTNANEQSQDPTPTPKKSPLFPFYTPSPAHRFFSGKSPAPATPRRFFKPPSPAKHIRAVLARRHGSVKPNEATIPEDEVVALDKNFGFSKQFEHKFEVGDEIGRGHFGYTCAAKFVKGQLKGQSVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLIQFHDAYEDNDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVMIQILNVVAFCHLQGVVHRDLKPENFLFTSKGENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADIWSVGVIAYILLCGSRPFWARTESGIFRAVLKADPGFDESPWPSLSDEAKDFVKRLLNKDPRKRMTAAQALGHPWIKNYKDVKVPLDILVFKLMKTYMRSSSLRKAALRALSKTLAIEELQYLKEQFALLEPNKTNAISLENIKAALMKNATDAMKESRIPDFLASLNALQYRRMAFDEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKPH 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1904 573 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 568 - -
Ssu6g1904 573 ProSiteProfiles Protein kinase domain profile. 120 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1904 573 CDD STKc_CAMK 119 381 - -
Ssu6g1904 573 SUPERFAMILY EF-hand 413 563 IPR011992 -
Ssu6g1904 573 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 32 568 - -
Ssu6g1904 573 Gene3D Phosphorylase Kinase; domain 1 113 208 - -
Ssu6g1904 573 Gene3D - 400 561 - -
Ssu6g1904 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Ssu6g1904 573 SUPERFAMILY Protein kinase-like (PK-like) 118 411 IPR011009 -
Ssu6g1904 573 MobiDBLite consensus disorder prediction 1 45 - -
Ssu6g1904 573 Pfam Protein kinase domain 120 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1904 573 Gene3D Transferase(Phosphotransferase) domain 1 209 395 - -
Ssu6g1904 573 Gene3D - 422 491 - -
Ssu6g1904 573 MobiDBLite consensus disorder prediction 9 38 - -
Ssu6g1904 573 ProSitePatterns Protein kinases ATP-binding region signature. 126 152 IPR017441 GO:0005524
Ssu6g1904 573 SMART serkin_6 120 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1904 Ssu-Chr6 33397892 33401770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1904 1 573 EF-hand Containing Proteins AT3G50530 73.101 0.0 913
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu6g1904 Pkinase 1.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1904 K00924 - gmx:100803313 1075.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1904 6 33397892 33401770 Ssu2g2465 2 83174147 83178812 PCT