Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1888 ATGAAGGAGGTACGCGAGCCAAGTGTTAATTATGTGTCCGCCAGCCTCATATTTCGTACGCTGTTTCGAAATTTGTCTTTCCGTGCTTCTATACCTCGTATTGCATGTTCCATTGCGAAATCTAAAGCTCTTGTTGGCAATTACCAACCAATTTTTACAACACCAACCGAAAGACACAGCACCGAAGGTGTTGGATCCAACAGTGTCAAACGTTTTGGTTTTTCTCTCTCATCAACGGATCAACCACCTATCATGTTGAACCGAGAAGGGACTCGTCTAAGGTTGAAAATGATGGTGGTTGCTGAAAGGAACCGGGACCGTGTGGTTAAGAGGGACGTGGTGGACCTTCCACAAAATGATCAAGCTGTAACTGTGGCATATTATGGGGAGGAGTTGCACGGGGGCGTACCTCTACCCTATTTCTCTAGAATGTCTCCTTTAAACACGGATAGACAAAACAAGGCAGTGGAGAATAAATACAAGCTCTTGAATAGTCCGATAAAGCAAGCAACACCTGGTGAGGCACAAAAGTTTGCAAGTTCCATGAAGGTTGCAACAGATGGAACATCCTCTCGTGGTAAGGCCATGTCATCTGCTGTTCTTCGAGCAGAGGAGATCCAATCAAATTTGGAACCAGAATTCCCTAGTTTTGTGAAGTCTTTAGTTAGATCACATGTTGCTAGTTGTTTTTGGATGGGGCTGCCGGTGTCATTCTGTAAAAGACACTTACCGGATAAGGATACAACAATCATTTTGGAGGATGAATCTGGTAAAGAATACAACACAAAATACATTGCATGTAAGACAGGATTGAGTGCTGGTTGGAGACAGTTTTCCGCTGTGCACAAATTGCAGGAGGGTGATGCGGTGGTCTTCCAATTAATTGAACCTACCAAATTTAAGGTTTATATAATAAGAGCTAATAATACGAGGGAACTAGATGGGGCCCTTCTGAATCTTGATAGttgcataaaacaaaaaacgGGAGGCAAAGATAATGCAGATACTGATGCTGTGACATGTAATAGCTCAAAGAGAAAACATGGTAAATCTGTCCCACTAGAtgtccaaaagaaaaagaagatcaGTGTGTCAAGATTGAGACCTAAGGCCAGGCCGTCAGCCGAACAATCCGAAAATGATAGTGAGGAAGCTCTCTCAGAAGTGATGGAGGGCTTTAAAATGCTTGAATTCAAACATGTGaaaggttttgaaaatttcagcATCATAGTTGATGGAATGCCAATAGATGCTGAATTCTCCACCGAGGTTCGAAACAAGTACTACAGGCTCTGCTGCAGTCAGCATGCCTTTCTTCATGACAATCTCATCGAGGGCATGAACTATAAGCTGATTGTTGGAATTATTTCTGAAACTGTCAACATTGCTGATGCCATAAAAGTTAGTGTGATATGCACCCCGCGTGTTGAATTTGCTAACTGGGACAAAACTTTGCTCGCCTTTGAGCATTTGGGCATGAATGTTGAATTTCTGAGAGTGCGGTTACGCCGGCTTGTAAGCATTGCCTATGAGACAGATGATGCCTCAGAGACAAGAAAGTACGTGGCGTATAGAAATGAATACAGTCGAGCTGATgatgaaataaataacatgGAAGCCAAGCTCGAAGAATTGAAGGAAGCATGTTATGGTTTTGGAGCTTATCTTGAGAGTTTGAAGTGCAAAGCTGAAAGCTATCATATCAAGTTTCAGAAAGAGGTTGCTGCTCCTTGGTGA 1737 0.4122 MKEVREPSVNYVSASLIFRTLFRNLSFRASIPRIACSIAKSKALVGNYQPIFTTPTERHSTEGVGSNSVKRFGFSLSSTDQPPIMLNREGTRLRLKMMVVAERNRDRVVKRDVVDLPQNDQAVTVAYYGEELHGGVPLPYFSRMSPLNTDRQNKAVENKYKLLNSPIKQATPGEAQKFASSMKVATDGTSSRGKAMSSAVLRAEEIQSNLEPEFPSFVKSLVRSHVASCFWMGLPVSFCKRHLPDKDTTIILEDESGKEYNTKYIACKTGLSAGWRQFSAVHKLQEGDAVVFQLIEPTKFKVYIIRANNTRELDGALLNLDSCIKQKTGGKDNADTDAVTCNSSKRKHGKSVPLDVQKKKKISVSRLRPKARPSAEQSENDSEEALSEVMEGFKMLEFKHVKGFENFSIIVDGMPIDAEFSTEVRNKYYRLCCSQHAFLHDNLIEGMNYKLIVGIISETVNIADAIKVSVICTPRVEFANWDKTLLAFEHLGMNVEFLRVRLRRLVSIAYETDDASETRKYVAYRNEYSRADDEINNMEAKLEELKEACYGFGAYLESLKCKAESYHIKFQKEVAAPW 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1888 578 CDD B3_DNA 215 306 IPR003340 GO:0003677
Ssu6g1888 578 Coils Coil 521 548 - -
Ssu6g1888 578 MobiDBLite consensus disorder prediction 329 383 - -
Ssu6g1888 578 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 149 514 IPR044837 -
Ssu6g1888 578 MobiDBLite consensus disorder prediction 341 362 - -
Ssu6g1888 578 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 149 514 - -
Ssu6g1888 578 SUPERFAMILY DNA-binding pseudobarrel domain 210 308 IPR015300 -
Ssu6g1888 578 Pfam B3 DNA binding domain 217 307 IPR003340 GO:0003677
Ssu6g1888 578 SMART B3_2 217 308 IPR003340 GO:0003677
Ssu6g1888 578 Gene3D - 196 310 IPR015300 -
Ssu6g1888 578 ProSiteProfiles B3 DNA-binding domain profile. 217 308 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1888 Ssu-Chr6 32943033 32947933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1888 199 352 B3 DNA Binding Superfamily AT3G19184 44.872 7.74e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu6g1888 B3 4.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1888 - - gmx:100819237 826.624