Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1882 ATGTCTCAACGTTCGACGCCAGCGCCGTTCTTGACGAAGACGTATCAGTTGGTGGATGACCCTGACACCGACGACGTTATTTCGTGGAGCGAAAGTGGCAACACTTTTGTCGTTTGGAAACACGCGGATTTCGCTAAGGATTTGCTTCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGATTCCGAAAGATCGTCCCCGACAAATGGGAATTCGCCAACGAGCATTTCAAGCGAGGACAGAAGGAGCTCCTCGCCGAGATCAAGCGGCGGAAGACGGTGCCCCAACCGCCGGCGGCCGGAAAATCCGTCGGCGGCGGCGGCGGGAACATCTCGGCGTCTCACTCCGGCGGAGACGACATGGGGTCGACGTCGACGGGGTCGGTGGAGGCGGCGCCCACTCAGTGCGCGGACTTATCGGGCGAGAACGAGAAATTGAAGAAGCACAACGAGAAATTGAGCGGCGAGCTAGGCGCGCGCGAAGAAGCAGTGCGAGGAGCTCGTGGCTTTCCTGAGAAACTCTCTGAACGTGTGCCCCGATGTGATCGACCGCATCATTCGGCAAGGAACGTGTGGGTCCGGCGACGATGCGGTGCGTTTTGA 627 0.5821 MSQRSTPAPFLTKTYQLVDDPDTDDVISWSESGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGQKELLAEIKRRKTVPQPPAAGKSVGGGGGNISASHSGGDDMGSTSTGSVEAAPTQCADLSGENEKLKKHNEKLSGELGAREEAVRGARGFPEKLSERVPRCDRPHHSARNVWVRRRCGAF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1882 208 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g1882 208 MobiDBLite consensus disorder prediction 124 141 - -
Ssu6g1882 208 Gene3D - 2 101 IPR036388 -
Ssu6g1882 208 Coils Coil 144 164 - -
Ssu6g1882 208 MobiDBLite consensus disorder prediction 149 178 - -
Ssu6g1882 208 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 166 - -
Ssu6g1882 208 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 166 IPR027725 -
Ssu6g1882 208 MobiDBLite consensus disorder prediction 98 178 - -
Ssu6g1882 208 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g1882 208 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g1882 208 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g1882 208 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu6g1882 208 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Ssu6g1882 208 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1882 Ssu-Chr6 32834483 32837713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1882 2 186 HSF AT4G36990 58.416 2.90e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu6g1882 HSF_DNA-bind 8.4e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1882 K09419 - gmx:100801897 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2484 2 83534547 83535663 Ssu6g1882 6 32834483 32837713 PCT