Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1878 ATGGCAACGAATTGCAATTGCAACAAGCGCTTCGCCAACAGTTACATGTTGTTGAAGCCCGAAGATGCGGGTTTCTTTGATCTCCTTCGTGTCTTAATTTACCGAAACTTGTCAAAAAGGAAGTTTGTGGAAAGCCATGCAGAGGATACTTTGGACGAAAGTTTAGGCCACCGGTGGcttatatttttgtctattttggCCCAGAAGCTTTTGCAGCTTGTGGCCAAGCCACTGGCACTCTTTGGGACTTGCGTTGAGCTTTTGATCAACCTCGTTGCCCTCAACGGCGGTGTATTTAGGCTCGTCCTTAACTTTCTCAGAGGTGAATTGGTCTTGCCCGATTCTAAATCAGAAAAGTATTTGTCTATTATTGGAAATTTGGACGTGCGAGTAAAGTTGGACGCGGTCGTCAAGCGTGAAGATTACAAGTACTATCCTGCACTTTCTATGATGGCTTCCAAAGCATCCTACGAGAACGCAGCTTTCCTTAAAAACACTGTGGAAGATTACTGGAAGATGGAATTTGTGGGGTTTTACAACTGCAGCAATGATTATCAAGGAAAGGCCACAACTCAAGTCTTGATTGCTTTGGATAAGCATGAGGATCGCCATACTTATGTTGTAGCCTTCAGAGGAACGGAACCGTTTGATGCTGATGCATGGTGCACTGATCTTGACATCTCGTGGTATGGGATTCCTGGCGTTGGAAGAATGCATGGTGGCTTTATGAAAGCCTTAGGGCTACAAAAAAATGTTGGGTGGCCAAAGGAAATTGAAGAACGAGATGAGAGTCTTCCCCCTTTAGCCTACTACATCATTAGGGACATTCTAAGAAAAGGTTTGAGCGAAAATGATAAAGCTAAGTTTATAGTGACAGGCCATAGTTTGGGTGGAGCACTCGCAATCCTTTTTGGGACGATCTTGTGTTTGCACAACGAGACGTTGTTATTGGAGAGGCTGGAAGGAATCTACACCTTTGGGCAACCAAGAGTTGGAGATGAAGCATATACAAAGTatatgaggcaaaaattgaagGATCATTCTGTCAGGTATTGCAGGTTTGTTTATTGCAACGACCTTGTTCCGAGGTTGCCCTACGATGACAAGGAAATGATGTTCAAGCACTTTGGGACATGTCTTTTCTTTAATAGGCGCTATGAACTCGAGgTTCTTGAAGAGCAACCGAATAAGAACTACTTCTCACCCTGGTGCGTGATACCCATGATATTGAACGCAATTTTAGAACTAATAAGGAGCTTCATTATTGTCTACCAAAGTGGGCCTTACTACAGAGAAGGATGGTTTCTCTTTGCTTTCAGGACTATCGGCTTAATAATTCCTGGGGTACCTGCTCATGGTCCCCAAGATTACATTAATTCCACTCTTTTAGGAAAGATTGAAAAGCACTTCAAAGTAGAGTGA 1422 0.4233 MATNCNCNKRFANSYMLLKPEDAGFFDLLRVLIYRNLSKRKFVESHAEDTLDESLGHRWLIFLSILAQKLLQLVAKPLALFGTCVELLINLVALNGGVFRLVLNFLRGELVLPDSKSEKYLSIIGNLDVRVKLDAVVKREDYKYYPALSMMASKASYENAAFLKNTVEDYWKMEFVGFYNCSNDYQGKATTQVLIALDKHEDRHTYVVAFRGTEPFDADAWCTDLDISWYGIPGVGRMHGGFMKALGLQKNVGWPKEIEERDESLPPLAYYIIRDILRKGLSENDKAKFIVTGHSLGGALAILFGTILCLHNETLLLERLEGIYTFGQPRVGDEAYTKYMRQKLKDHSVRYCRFVYCNDLVPRLPYDDKEMMFKHFGTCLFFNRRYELEVLEEQPNKNYFSPWCVIPMILNAILELIRSFIIVYQSGPYYREGWFLFAFRTIGLIIPGVPAHGPQDYINSTLLGKIEKHFKVE 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1878 473 Pfam Lipase (class 3) 207 368 IPR002921 GO:0006629
Ssu6g1878 473 CDD Lipase_3 143 383 - -
Ssu6g1878 473 PANTHER TRIACYLGLYCEROL LIPASE-RELATED 5 473 - -
Ssu6g1878 473 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 5 473 IPR044819 GO:0004806|GO:0006629
Ssu6g1878 473 SUPERFAMILY alpha/beta-Hydrolases 148 385 IPR029058 -
Ssu6g1878 473 Gene3D alpha/beta hydrolase 136 404 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1878 Ssu-Chr6 32737084 32741225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1878 15 463 Acyl Lipid Metabolism Gene Families AT5G67050 49.345 3.82e-161 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1878 - - gmx:100814454 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2495 2 83685301 83702615 Ssu6g1878 6 32737084 32741225 PCT