Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1876 ATGGATGTGGACACAGTGAAAGCTTCCGCGAGTGACACCAGCAACATGGACATGATGGCAATGATGATGCAAATGGAAAAGTTCCCCGAATTCAGCAACCCTTTTTATACCGCCACTCCCCCATACCAAGAAACCGAGTTGTTATCAAGTGGAAGCTCCACAACCAGCGTTTCCGCCCTATTCAACAATGTAACTCCACCGACCCTCATTGATCCACCACCGTCAAATGTCAATTTcgccaacaacaacaacaacaacaaccttatCCAACAACCTATGATGACACCGTCCCTTCGACCCCCACCACCCAGCACTTCCTTCCCCTACCCTTCTGAGAAAAACAACTCCATGGCGGCGATGAGGGAAATGATATTCCGAATAGCGGTGATGCAACCGATCCACATAGACCCGGAATCGATAAAGCCACCGAAGCGACGGAACGTGAAGATTTCCAAGGATCCGCAGAGCGTGGCGGCGAGGCACAGGAGGGAGAGGATAGGCGAGAAAATAAGGATCCTGCAGAGATTAGTCCCTGGCGGCACCAAAATGGACACGGCTTCGATGTTGGACGAGGCCATACACTACGTGAAGTTCTTGAAGAAACAGGTGCAGACGCTGGAACAAGCTGGGGCAAATACACCGCCCAATCAAATTGGCGCTGTTGGCTTCCCACTGGGGATGTCTAACTCCAGTGTTAATTATTCTTCTTTGTTGATGAAGGGTTGCCAACCTTGTCAGCTGTTCGGTTCCACTTCTAAACAATTGCTCAGCTAA 774 0.4832 MDVDTVKASASDTSNMDMMAMMMQMEKFPEFSNPFYTATPPYQETELLSSGSSTTSVSALFNNVTPPTLIDPPPSNVNFANNNNNNNLIQQPMMTPSLRPPPPSTSFPYPSEKNNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERIGEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANTPPNQIGAVGFPLGMSNSSVNYSSLLMKGCQPCQLFGSTSKQLLS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1876 257 Gene3D - 148 215 IPR036638 GO:0046983
Ssu6g1876 257 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 253 IPR045843 GO:0003700|GO:0006355
Ssu6g1876 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 209 IPR036638 GO:0046983
Ssu6g1876 257 Pfam Helix-loop-helix DNA-binding domain 159 199 IPR011598 GO:0046983
Ssu6g1876 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Ssu6g1876 257 Coils Coil 189 209 - -
Ssu6g1876 257 PANTHER TRANSCRIPTION FACTOR HEC2 1 253 - -
Ssu6g1876 257 CDD bHLH_AtIND_like 151 207 - -
Ssu6g1876 257 SMART finulus 156 205 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1876 Ssu-Chr6 32707126 32707899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1876 12 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 55.665 3.51e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g1876 HLH 6.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1876 - - gmx:100800816 308.145