Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1875 ATGAATTGGGTTCGAGGAGACGCCGTTGGTCGAGGAAGCTTCGCCACCGTTAGTTTAGCGATTCCCAAGAGCAACCCTTCTCAGTTTCCGTCTCTAACCGCCGTTAAGTCCTCCGAGGCTCTCACCGCGTGCTGGCTCGAGAACGAGAAACGCGTGCTCGATCGCCTAGGTCCGTGTCCAAGAATCATTCGCTGCTTCGGGGACGACCACAGTTTCGAGAATGGTGTCGAGTACTACAATCTGTTCCTCGAATACGCCGCCGGCGGGAGTCTGGCCGACGAGCTCAGATTTCACGGTGGCCGGATTCCCGAGCCTCGGGCTCGGCGTTACGCGAGGTCCATCGTGGAAGGCTTAAATCACGTGCACCGAAGCGGGTTCGTCCACTGCGACATCAAGCTCCAAAACATCCTCGTGTTCGACGACGGGGAAATCAAGATTGCGGATTTCGGTCTCGCGAAGGAGGCAGGGGAGAGAAAACAGAGGAAGAGCGAATGCCGGGGGACACCGATGTTTATGTCGCCGGAGCAAGTGATCGACGGCGAGTGCGACTCGCCGGCGGACATTTGGGCTCTGGGGTGTGCCGTTGTGGAGATGGTGACCGGGAAACCGGCGTGGCAGGTGGAGAAGGGGTCCAGCATGTGGTCGCTGTTGCTTCGAATTGCGGTGGGAGAAGAGGTTCCCGAGATACCGGACAATTTGTCGCAAGAGGGGAAGGATTTTCTCGAGAAGTGTTTTGTTAAGGATCCCAACAAGAGGTGGAGCGCTGAGATGCTTTTGAAACACCCTTTTGTTTCTGATGACACTGTTTCATCTAAGAATGTTCGTGAGTCACCGAGAAGTCACTTCGAGTTCCCCGATTGGGTTTCTTGTGTGGCGGCTTCACTTCCCACTTCGCCGGACTCTGAAGAAAAGTGGGGTTTTGATGAGTCCTGTTTGAGTAGTTTCTGCTCGCCGGAGGACCGGCTGCGGCGGCTCGTGACGGTTCATACGCCGGCGGGTTGGTCGGAATCGGATGGATGGAGTAGCGTTAGGTGA 1035 0.5623 MNWVRGDAVGRGSFATVSLAIPKSNPSQFPSLTAVKSSEALTACWLENEKRVLDRLGPCPRIIRCFGDDHSFENGVEYYNLFLEYAAGGSLADELRFHGGRIPEPRARRYARSIVEGLNHVHRSGFVHCDIKLQNILVFDDGEIKIADFGLAKEAGERKQRKSECRGTPMFMSPEQVIDGECDSPADIWALGCAVVEMVTGKPAWQVEKGSSMWSLLLRIAVGEEVPEIPDNLSQEGKDFLEKCFVKDPNKRWSAEMLLKHPFVSDDTVSSKNVRESPRSHFEFPDWVSCVAASLPTSPDSEEKWGFDESCLSSFCSPEDRLRRLVTVHTPAGWSESDGWSSVR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1875 344 SUPERFAMILY Protein kinase-like (PK-like) 3 296 IPR011009 -
Ssu6g1875 344 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1875 344 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 303 - -
Ssu6g1875 344 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1875 344 Pfam Protein kinase domain 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1875 344 CDD STKc_MAPKKK 2 264 - -
Ssu6g1875 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Ssu6g1875 344 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Ssu6g1875 344 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 303 - -
Ssu6g1875 344 Gene3D Transferase(Phosphotransferase) domain 1 2 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1875 Ssu-Chr6 32633750 32634784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1875 1 344 MAP Kinase Kinase Kinase AT5G67080 48.760 3.42e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Ssu6g1875 Pkinase 6.2e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1875 - - gmx:100798607 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2499 2 83789491 83790534 Ssu6g1875 6 32633750 32634784 PCT