Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1871 ATGTGGCTTTTAAAACGGTTATTGATTACCATTGtcattgcctccaccaccactaccaccatcgaCGGCGGTTGTGGCGGCAgcagtgatagtggtggtggtggtagcaacagtggtgatggtagtgacAGTGACgataacaatgatggtggtagcTGCGGGGGCGAAAACAACAGCGCTGTTGGTGGCAATGGCAAGCCTAGTGACTGTGGTGGTGACAACAGTGGTGGTAGCGATAATGATGACAGCAACAGTGGTGGTAGTAGCAACAACGGTAGTAGTGACAGTAACAGTGGCGGTAGTGGTGGCGACAATAATGGTCTTTtaagaggtATTCTTCTTCGTTCGTCCCTCACAACCCATAAGGGTAACGACGCACGCAAAACTGCACAAGAAAATGCACTACAAGATGGGATCTTGGCGCTTATGCCTTACAAGGGTTCTACTGCCAACGTGTCTTCTTTATCAGTGGCAGCTAGTGAGAACGAAACTGATGACTACGAGAGTGAGGTGTTGCTTCGAGAGGGTGAAGCGTTGGTGGAAGAGGTTCCAGTTCTGCCAAAGTCGGTTCATTGTAGGAGTTCGTCCATAAAGGGCAGAGCTGTGAAAGTTCATAACCTGTCTAAAAAGTGGAGGAAGAGTAGGATCAACAAGAAATTGAAGGCTTTGCAAAATCTAATTTCGAATTCTAACAAGACTAATAAGGCTTCAATGCTTGATGAGGCTATTGAATATCTTAAACAACTTCAACTCCAAGTATAG 762 0.3924 MWLLKRLLITIVIASTTTTTIDGGCGGSSDSGGGGSNSGDGSDSDDNNDGGSCGGENNSAVGGNGKPSDCGGDNSGGSDNDDSNSGGSSNNGSSDSNSGGSGGDNNGLLRGILLRSSLTTHKGNDARKTAQENALQDGILALMPYKGSTANVSSLSVAASENETDDYESEVLLREGEALVEEVPVLPKSVHCRSSSIKGRAVKVHNLSKKWRKSRINKKLKALQNLISNSNKTNKASMLDEAIEYLKQLQLQV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1871 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
Ssu6g1871 253 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 146 253 IPR031066 -
Ssu6g1871 253 MobiDBLite consensus disorder prediction 19 64 - -
Ssu6g1871 253 Pfam Helix-loop-helix DNA-binding domain 204 250 IPR011598 GO:0046983
Ssu6g1871 253 SMART finulus 206 253 IPR011598 GO:0046983
Ssu6g1871 253 MobiDBLite consensus disorder prediction 19 108 - -
Ssu6g1871 253 PANTHER TRANSCRIPTION FACTOR SPATULA 146 253 - -
Ssu6g1871 253 Coils Coil 213 233 - -
Ssu6g1871 253 Gene3D - 198 253 IPR036638 GO:0046983
Ssu6g1871 253 MobiDBLite consensus disorder prediction 71 104 - -
Ssu6g1871 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 253 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1871 Ssu-Chr6 32522167 32528335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1871 162 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 65.591 2.73e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g1871 HLH 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1871 - - gmx:100806962 161.384
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2504 2 83867435 83870280 Ssu6g1871 6 32522167 32528335 PCT