Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1870 ATGGCTAAGGAAGAGGAACAGAAAAACCAACTCCTCGGCCGCACAGATCTCGCTCATAAGAGTCTCCTTCAGAGCGATGCCCTCTATCAGTATATACTTGAAACCAGTGTATATCCAAGAGAGCACGAGTGCTTGAAGGAGCTCCGCGAGATGACAGAAAAACACCCACGGAACTTCATGGCTACACCACCTGACGAAGGACAGCTTCTGAGCATGCTTCTTAAGCTCACGAATGCCAAGAACACCATGGAAATTGGTGTCTACACTGGTTACTCTCTGCTCTCCACTGCCCTGGCTCTTCCCCCTGATGGAAAGATCTTGGCTTTGGACGTGAACCGCGAATACTATGAGTTGGGATTGCGCATAATTCAAAAAGCTGGAGTGGCCCACAAGATTGACTTCAGAGAAGGACCTGCTCTTCCTTTTCTTGACGAGCTGCTTAAAGATGAAAAAAACATGGGAACGTTGGATTTCATTTTCGTGGACGCTGATAAGAGCAACTACTTGAACTATCACAAGAGGGTAATTGACCTCGTGAAGGTTGGAGGGCTGATCGGATACGATAACACTCTATGGGGTGGATCTGTGGCGGCGCCACCTGATGCGCCGTTGCTGGATTACATGAAGCCTAATCGCGCCTATTTCATAGAGCTCAACAAGTATCTGGCTCAAGATTCCAGGATTGAGATTTGCCAACTCCCCGTGGGTGATGGGATTACCCTGTGCCGTCGCAGCATCTGA 741 0.4885 MAKEEEQKNQLLGRTDLAHKSLLQSDALYQYILETSVYPREHECLKELREMTEKHPRNFMATPPDEGQLLSMLLKLTNAKNTMEIGVYTGYSLLSTALALPPDGKILALDVNREYYELGLRIIQKAGVAHKIDFREGPALPFLDELLKDEKNMGTLDFIFVDADKSNYLNYHKRVIDLVKVGGLIGYDNTLWGGSVAAPPDAPLLDYMKPNRAYFIELNKYLAQDSRIEICQLPVGDGITLCRRSI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1870 246 PANTHER CAFFEOYL-COA 3-O-METHYLTRANSFERASE 4 244 - -
Ssu6g1870 246 PANTHER O-METHYLTRANSFERASE-RELATED 4 244 - -
Ssu6g1870 246 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 25 244 IPR029063 -
Ssu6g1870 246 Gene3D Vaccinia Virus protein VP39 11 245 IPR029063 -
Ssu6g1870 246 Pfam O-methyltransferase 34 244 IPR002935 GO:0008171
Ssu6g1870 246 CDD AdoMet_MTases 84 185 - -
Ssu6g1870 246 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 21 245 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1870 Ssu-Chr6 32380508 32382188 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1870 4 244 Monolignol Biosynthesis Gene Families AT4G34050 74.274 6.66e-133 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1870 K00588 - gmx:100305498 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2505 2 83886860 83888441 Ssu6g1870 6 32380508 32382188 PCT