Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1865 ATGCTTGCAAATTTAAATCCAACAAAAACGCAACAAGGCAATGGCTCCACGAGACCGAGCCATCGCACTCGTCGGGCCCAGATCAACATTGCCCCACAAAGAGATCTGCTACAGAGGCTCTGGCTTGGCACTTTCGACACCGCTGAGGAAGCCGCATGTGCCTACGACAATGTGACGCGTGAGTTCCGCAACGCGAAAGCCAAGACCAACTTCCCCACGCCCTCGGAgctcaaaaacaacaacacaagCAGTCCCAATGGACCTCACCCTCACCTAGCTCCCCACTGCCGTCGTCGGCATCGACACATTATCGTTCCCCTTGGCACGCCCTGTCTTATTACCAACGCGCAAAGCAATTCCAATTCCTCGTCCGTCGTGGACTACAAGCAGCAGGGACTCTTGGATCTCGACTGCAACATGCCTCCGTTGCCAAAGGTTGCGTGA 444 0.5293 MLANLNPTKTQQGNGSTRPSHRTRRAQINIAPQRDLLQRLWLGTFDTAEEAACAYDNVTREFRNAKAKTNFPTPSELKNNNTSSPNGPHPHLAPHCRRRHRHIIVPLGTPCLITNAQSNSNSSSVVDYKQQGLLDLDCNMPPLPKVA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1865 147 SMART rav1_2 20 78 IPR001471 GO:0003700|GO:0006355
Ssu6g1865 147 MobiDBLite consensus disorder prediction 69 92 - -
Ssu6g1865 147 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 38 96 - -
Ssu6g1865 147 MobiDBLite consensus disorder prediction 69 88 - -
Ssu6g1865 147 MobiDBLite consensus disorder prediction 1 27 - -
Ssu6g1865 147 ProSiteProfiles AP2/ERF domain profile. 10 72 IPR001471 GO:0003700|GO:0006355
Ssu6g1865 147 Coils Coil 48 68 - -
Ssu6g1865 147 MobiDBLite consensus disorder prediction 1 28 - -
Ssu6g1865 147 CDD AP2 38 72 IPR001471 GO:0003700|GO:0006355
Ssu6g1865 147 SUPERFAMILY DNA-binding domain 38 73 IPR016177 GO:0003677
Ssu6g1865 147 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1865 Ssu-Chr6 32309441 32310408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1865 39 89 AP2-EREBP Transcription Factor Family AT5G44210 60.784 2.93e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1865 K09286 - gmx:100500601 88.9669