Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1864 ATGGAAGCCGTCCGAGTGATCTCCATCACTACAATCAAGGCCCCGAGTCACAATAACTTCAACTCAGCTCAGAAAATCGATTTAACTCCGTGGGATCTTCAATTCCTCCAACTTAAATGTAACCAAAGAGGGCTTCTTTTTCGCAACCCCATCACCGAAAAACACACCGCAAGCCAAATCCAGCACCTGCAACACTCCCTTTCCTCCACTCTCGCCTTCTTTCCACCCCTCGCAGGTCGTCTCGCCATCCTCCAACATCACGACAACACTGTCTCCTGCCACATTGTATGCGACAACGCAGGTGTCCTTTTTGTCCACGCCGTTGCACCCAACACCACCGTCTCGGACATCCTTGAACCCAAATACGTTCCTCCCGTTGTCCGCTCCTTCTTTCCATTCAACGGAGTTAAAAACTACGAAGGCACGTCACAGCCACTGCTGGCAGTGCAAGTGACGGAGCTAGTTGACGGCATCTTCATCGGCTTCGCAATCAACCACGCGGTTGCCGACGGCAAGTCGTTTTGGCATTTCGTCAATTCCTGGGCTGAAATCACACGTGGTTCCTCTAAAATATCCAAGCTCCCCGCTCTTGAACGTTGCTTTCTGGATGGCGTTGACCGCTCCATACTGTTTCTTTTCACAAAGGAGGAAGAGAAGCAACACTCCCCAAACCTCGAACCACAAACTCCACGGGGCTTTCATTTCACGAAGGAAAAAATCGCGGAACTCAAATCTAGAGCTAATGCAGAGGCAAACACCGACAAAATATCTTCTCTGCAAGCTCTTTTAACTCTCCTTTGGCACATTGTCACACGTTGCAAACGTGTTGACCCGCAAGAAGAGGTGTGTTATGGGTTGATGATCGGCGTTGGGCCCAGGATGGTTCCACCGCTGGCAGAGGATTATTTTGGAAACTCGGTGATGGTTGGTGTTGTTACCAAGAAAGCTGGGGAACTATTGGAGGGTGGGCTCGGAAAGGGTGCTTTGGAGATGAATAAGATGATTTCTTTGCACACTcatgagaaaataaagaagcacTATGAGGGTTGGGTGAGAACCCCATTGCTGTATACGCCGCAGAGTAGCACTAGCGTGGCTGCTAATAAATCCTTAGCCGTTGGCAGTTCCCCGAGGTTCAACATTTATGGTAATGATTTTGGGTGGGGAAAGCCTGTGGCGGTTCAAATAGCGTTAGCAGAACGATTATTCTGTTTGCTGGCGCTGAAGAAGGTTCTATTGACATTGAAGTGTTCCTTCCCTATGAGATTTTGGAGGAAATGGGAAATGACTCTGAGCTCATGGATGCCATTTCCAACTAGTGTGGGTACAAGGCAACGGGAAATGATTGTACATGTTGcgtaa 1362 0.4809 MEAVRVISITTIKAPSHNNFNSAQKIDLTPWDLQFLQLKCNQRGLLFRNPITEKHTASQIQHLQHSLSSTLAFFPPLAGRLAILQHHDNTVSCHIVCDNAGVLFVHAVAPNTTVSDILEPKYVPPVVRSFFPFNGVKNYEGTSQPLLAVQVTELVDGIFIGFAINHAVADGKSFWHFVNSWAEITRGSSKISKLPALERCFLDGVDRSILFLFTKEEEKQHSPNLEPQTPRGFHFTKEKIAELKSRANAEANTDKISSLQALLTLLWHIVTRCKRVDPQEEVCYGLMIGVGPRMVPPLAEDYFGNSVMVGVVTKKAGELLEGGLGKGALEMNKMISLHTHEKIKKHYEGWVRTPLLYTPQSSTSVAANKSLAVGSSPRFNIYGNDFGWGKPVAVQIALAERLFCLLALKKVLLTLKCSFPMRFWRKWEMTLSSWMPFPTSVGTRQREMIVHVA 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1864 453 Gene3D - 213 416 IPR023213 -
Ssu6g1864 453 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 3 397 - -
Ssu6g1864 453 PANTHER ANTHRANILATE N-HYDROXYCINNAMOYL/BENZOYLTRANSFERASE-LIKE PROTEIN 3 397 - -
Ssu6g1864 453 Pfam Transferase family 4 396 - -
Ssu6g1864 453 Gene3D - 2 206 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1864 Ssu-Chr6 32306717 32308078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1864 61 392 Monolignol Biosynthesis Gene Families AT5G48930 27.684 6.07e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1864 - - gmx:100797643 558.91