Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1863 ATGCCGAGGATCCTCAGACAAGATCCTATACTAAGTTCCAATGGATTCATCAGTGAGGACATGACTGGCTTAATCGTTCTAGCGAGAATGGAGGGTGGGATAGTTATCTCTTCGTCGATTGTCAATCTTTCTCCTAGTCTTGATACGAAATGGGCGATTTGGCTGCGCCCGCCATATCACCAAGGCCGTCTCGCCATTCTCCAACATCACGACAACACTGTCTCCTCCCACATCGTATGCGACAACACAGGAGCCCTCTTTGTCCACGCCGTTGCGCCCAACACCACTGTGGCAGACATCCTTCAACCCAAATACGCTCCTCCCGTTGTCCGCTCCTTCTTTACACTCAACGGCGTTAAAAACTGCGAAGGTACGTCACAGCCATTGCTGGCAGTGCAAGTGACGGAGCTAGTTGACGGCATCTTCATCGCCCTCACAATCAACCACGTGGTTGCTGACGGCAAGTCGTTTTGGCATTTCGTCAATTCCTGGGCCGAACTCTCACGTGGTTCCCATAAAATATCCAAACTCCCTACTCTCGAACGTTGCTTTCTGGATGGCATTGACCGCCCCATGCGGTTTCCTTTCACAGAGGAGGAAGACAAACAACACTCCCCAAACCTCAATCCACAAACTCCACTTGAGAGGGCCTTACACTTCACGAAGGAAAAAATCGCGCAACTCAAATCAAAAGCCAACGCAGAGGCCAACACCGACAAAATATCTTCTCTGCAAGCGCTTTTAACTCTCCTTTGGCGCTCCGTGACACGTTGCAAACGTGTTGACCCGCAAGAAAATGTGCATCACGTGTTGTTCATTGGCGTTTGGTCCAGGATGGTTCCACCACTGGCAGACGGTTATTTTGGAAACTCGGTGATAGCTAGTGTTGTCACCATGAAAGCCGGGGAACTGTTGGAGGGTGGGCTCGGAAAGGGTGCTTGGGAGATGAACAAGGCGATTTCTTTGCACTCTCATGAGAAGGTAAAGAAGCACTATGAGTGTTGGGTGAGAACCCCAAGGCTGTTAACGCTGCCGAGTGGCGTGGCTGGTAGTAATTACTTGATCACTAGCAGTTCCCCAAGGTTCAACATATACGGTAACGATTTTGGTTGGGGAAAGCCTGAAGCAGTTCGAATTGGAGCTGGACATAAACGTAACGGAATGATTAGTGTGTTTGCTGGCGCTGAAGAAGGCTCCATTGACATTGCAGTGGACCTTCCTTGTGAGATTTTGGAGGCCATGGGAAATGACGCTGAGTTCATGGACGTCGCGTCCAACTAA 1281 0.5004 MPRILRQDPILSSNGFISEDMTGLIVLARMEGGIVISSSIVNLSPSLDTKWAIWLRPPYHQGRLAILQHHDNTVSSHIVCDNTGALFVHAVAPNTTVADILQPKYAPPVVRSFFTLNGVKNCEGTSQPLLAVQVTELVDGIFIALTINHVVADGKSFWHFVNSWAELSRGSHKISKLPTLERCFLDGIDRPMRFPFTEEEDKQHSPNLNPQTPLERALHFTKEKIAQLKSKANAEANTDKISSLQALLTLLWRSVTRCKRVDPQENVHHVLFIGVWSRMVPPLADGYFGNSVIASVVTMKAGELLEGGLGKGAWEMNKAISLHSHEKVKKHYECWVRTPRLLTLPSGVAGSNYLITSSSPRFNIYGNDFGWGKPEAVRIGAGHKRNGMISVFAGAEEGSIDIAVDLPCEILEAMGNDAEFMDVASN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1863 426 Pfam Transferase family 75 421 - -
Ssu6g1863 426 Gene3D - 196 416 IPR023213 -
Ssu6g1863 426 PANTHER ANTHRANILATE N-HYDROXYCINNAMOYL/BENZOYLTRANSFERASE-LIKE PROTEIN 61 424 - -
Ssu6g1863 426 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 61 424 - -
Ssu6g1863 426 Gene3D - 56 191 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1863 Ssu-Chr6 32277829 32279908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1863 62 409 Monolignol Biosynthesis Gene Families AT5G48930 27.473 2.72e-23 99.8