Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1860 ATGTGGGATCTCAATGACTCACCCGATCAGAGGAAGGACGAGGAATCCGAAGGGTGTTCTTCCCTCAAGACTTCCATCGACGGGGATGATGATAACAACAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCGAGCTCCTCCGCGGTGGTCATCGAGGATGGAtcagaagaagaggaagaggacgAGGAGGAGCAAGAAGAAGGTGGCAGAAGAAGCATGAAGAAACGAAGCAGCAAGATTTTCGGCTTCTCCGTGACCCAAGGTGAAGAGTCCATGGACAGTGACCACCCACCTGTCACAAGGCAGTTTTTTCCGGTGGAAGAGGCTGACGTGGTGGTAGCATCGGGTGGTGGAAGCTCCACCTTCCCTCGTGCTCACTGGGTAGGTGTGAAATTTTGCCAATCAGAAACACTTGGTGCTGGAAAATCGGTGGAAGTTTCGCAGCCTATGAAGAAGAGTCGCCGAGGACCAAGGTCAAGGAGTTCTCAGTATAGGGGAGTCACCTTTTACAGAAGAACCGGTCGGTGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTAGGTAAGTATAATGATAAGAATGATTGTGTGTGTTCTGCGTATGATAGAGCGGCCATTAAGTTCCGAGGAGTGGAGGCGGACATAAACTTCAATATTGAAGATTATGAAGACGACTTGAAGCAGATGAGCAATCTGACCAAGGAAGAGTTCGTACACGTGCTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAAGCTCGAATGGGCCAATTTTTAGGGAAAAAGTACGTTTATTTGGGTCTCTTTGACACCGAGATTGAAGCTGCACGGGCTTATGACAAAGCAGCCATAAAATGCAACGGTAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGAGAATGAGCTTAATTCCGAATCCACAGGTAACGCTGCAGATCACAATCTCGATTTAAGTTTGGGCAATTCAAGTTCAAAGACTGGCAATAATCAAGCGTTGGGGAATCACGCCACAAATGCTGCAACTCATGATCAGCACCTGCCATCTGAATCTAATTGGCGGAATGGAGGAAGCAAGCCTAAGCTGGTGAATATACTACCAAAACCAGGTAATAGAAGCAACAAGGACGCACATGGAAGGGATGTGCACGGGGAGAGTGAAGCATTGCGGATGCTAAGTCAAACCCACCTTCATTCTCCAGCCTCCAATGAAATGCAAAGATATGGTCCCTACAGGTCTCCTGGAGGAGAGTCTCAAATGCTTCAAAATTTTGCTCACATTCACCCACCAAATATTCATTTTCCCAGCAGCAGCATTGGAGGCCGTATTGGAAGTGATCTTTCATTATCAACGGCCGATCAACAACAGTGGCAATCCGGGCCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACAACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCCCATGA 1551 0.4674 MWDLNDSPDQRKDEESEGCSSLKTSIDGDDDNNKGKRVGSVSNSSSSAVVIEDGSEEEEEDEEEQEEGGRRSMKKRSSKIFGFSVTQGEESMDSDHPPVTRQFFPVEEADVVVASGGGSSTFPRAHWVGVKFCQSETLGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGKYNDKNDCVCSAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESTGNAADHNLDLSLGNSSSKTGNNQALGNHATNAATHDQHLPSESNWRNGGSKPKLVNILPKPGNRSNKDAHGRDVHGESEALRMLSQTHLHSPASNEMQRYGPYRSPGGESQMLQNFAHIHPPNIHFPSSSIGGRIGSDLSLSTADQQQWQSGPPHYLATAAASSGFPQQIRPSSQGWLQKNGFHTLMRPP 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1860 516 MobiDBLite consensus disorder prediction 143 163 - -
Ssu6g1860 516 MobiDBLite consensus disorder prediction 323 399 - -
Ssu6g1860 516 MobiDBLite consensus disorder prediction 37 51 - -
Ssu6g1860 516 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g1860 516 Pfam AP2 domain 255 304 IPR001471 GO:0003700|GO:0006355
Ssu6g1860 516 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 514 - -
Ssu6g1860 516 CDD AP2 255 315 IPR001471 GO:0003700|GO:0006355
Ssu6g1860 516 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 514 - -
Ssu6g1860 516 SMART rav1_2 256 319 IPR001471 GO:0003700|GO:0006355
Ssu6g1860 516 SMART rav1_2 163 226 IPR001471 GO:0003700|GO:0006355
Ssu6g1860 516 SUPERFAMILY DNA-binding domain 255 315 IPR016177 GO:0003677
Ssu6g1860 516 SUPERFAMILY DNA-binding domain 162 221 IPR016177 GO:0003677
Ssu6g1860 516 MobiDBLite consensus disorder prediction 52 66 - -
Ssu6g1860 516 Gene3D AP2/ERF domain 255 314 IPR036955 GO:0003700|GO:0006355
Ssu6g1860 516 Gene3D AP2/ERF domain 162 222 IPR036955 GO:0003700|GO:0006355
Ssu6g1860 516 ProSiteProfiles AP2/ERF domain profile. 163 220 IPR001471 GO:0003700|GO:0006355
Ssu6g1860 516 PRINTS Ethylene responsive element binding protein signature 295 315 IPR001471 GO:0003700|GO:0006355
Ssu6g1860 516 PRINTS Ethylene responsive element binding protein signature 257 268 IPR001471 GO:0003700|GO:0006355
Ssu6g1860 516 MobiDBLite consensus disorder prediction 323 376 - -
Ssu6g1860 516 ProSiteProfiles AP2/ERF domain profile. 256 313 IPR001471 GO:0003700|GO:0006355
Ssu6g1860 516 CDD AP2 163 221 IPR001471 GO:0003700|GO:0006355
Ssu6g1860 516 MobiDBLite consensus disorder prediction 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1860 Ssu-Chr6 32189384 32192350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1860 1 351 AP2-EREBP Transcription Factor Family AT4G36920 63.934 8.18e-134 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu6g1860 AP2 3.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1860 K09284 - gmx:100792442 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2511 2 83968698 83971445 Ssu6g1860 6 32189384 32192350 PCT