Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1858 ATGGaaggagaaggaggaggaagCGCGAGGAAGCGAGGCAAAGAGGGTGAGACACGTTACAAAGGAATCAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAGATTCGTGAACCCAACAAGCGCTCTCGGATTTGGCTCGGTTCCTATTCCACGCCCGTCGCGGCGGCGCGTGCCTACGACACCGCCGTCTTCTACCTCCGGGGACCCTCCGCCCGCCTCAACTTCCCGGAGCTTCTCGCCGTGGAGGCtcccgccgccgccgccgcgtCCGACATGTCCGCCGCCTCCATCCGGAAGAAAGCCACCGAGGTCGGAGCCAGAGTCGATGCCCTCCACCGCCAGCACCCCCCCGCCGGAGAATTCGCCGACCGGGTCGACCTTAATAAGGTGCCCGAACCCGAGAATTCGGACTGTGACTGGGACAGGGATTAG 432 0.5764 MEGEGGGSARKRGKEGETRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLAVEAPAAAAASDMSAASIRKKATEVGARVDALHRQHPPAGEFADRVDLNKVPEPENSDCDWDRD 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1858 143 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Ssu6g1858 143 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Ssu6g1858 143 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Ssu6g1858 143 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 1 137 - -
Ssu6g1858 143 MobiDBLite consensus disorder prediction 108 143 - -
Ssu6g1858 143 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Ssu6g1858 143 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Ssu6g1858 143 CDD AP2 18 78 IPR001471 GO:0003700|GO:0006355
Ssu6g1858 143 PRINTS Ethylene responsive element binding protein signature 58 78 IPR001471 GO:0003700|GO:0006355
Ssu6g1858 143 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Ssu6g1858 143 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1858 Ssu-Chr6 32109638 32110069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1858 4 141 AP2-EREBP Transcription Factor Family AT5G67190 54.011 1.04e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu6g1858 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1858 K09286 - gmx:100784157 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2514 2 84028688 84029179 Ssu6g1858 6 32109638 32110069 PCT