Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1856 ATGCATCATCCCAAAACGGCAGCAGCAACACTGGTCCCTCTGTTCCTATACTTGACGGTGGCCGGTTGCGCTCCTGCGCCGACGCTCCCCGCGGACGCGGTGTCCCTGTTGTCGTTCAAGCGGGAGGCGGACCAAGACAACAAGCTCCTGTACGCGGTGAACGAGCGGTACGACTACTGCGAGTGGCAGGGCGTGAAGTGCGCGCAAGGGAGGGTGGTCTGGTTGGTGGTCCAGTCCGTGGGCCTGCGCGGCCCATTCCCGGCGGACACCCTGACGAAGCTGGACCAGCTCCGGGTGATGAGCCTCCGCAACAACTCCCTCTTCGGGCCCATCCCGGACCTCTCCCCGCTCACCAACCTCAAGTCCCTCTTCCTCGACCACAACAACTTCTCCGGCTccttccctccctccctcctcctcctccaccgcCTCCTCACCCTCTCCCTCTCCCACAACAACCTCTCCGGCCCGCTCCCAACTCAGCTGACCCTCCTCGACCGCCTCATCGCCCTCCGCCTCGACTCCAACAGCTTCTCCGGCGCGCTCCCCCCTCTCAACCACACCGCGTTGAAACTCCTGAACGTCTCCAACAACAACCTCACCGGCCCGGTTCCCGTCACCCCCTCGCTGTCCCGATTAAACGCGGCGTCGTTTTCGGGAAACCCGGGTCTCTGCGGGGAGATTGTGCACAGAGAGTGCGACCCTCCTTCGCACTTCTTCGGCACCGCGCCGTTGAGCCAGAGCGAACAATCTCAGGGCATCGTGGTCGTTCCTTCTTCAACCAAAACCGAACACCGTAAAAAGACCGGGCTGGTTCTCGGCTCTGTTGTCGCGGCTGTTCTTCTCGCCGCTTTTGCTCTCGTGGTGGTATCGTTGGTGAGAAAGAAGCAAACCGGTTCGGGAAAAGGGGAGGTTTTGGAGAGTGCTGATGCGGTGGAGGTGGGGAGTGAGAGGGAGGTGAAGGTGAGGAAGATGGAGGAGGCGCACAGGAGTGGGAAGTTGGTGTTCTGCTGCGGGGAGGTGCAGCGGTACACGCTGGAGATGCTGATGAGGGCTTCGGCGGAGCTGTTGGGGAGGGGGAGCGTGGGGACCACGTACAAGGCGGTTCTGGATTCGCGGCTCATAGTGACGGTGAAGAGGTTGGATGGGGGGAAAACTGCGGGGAGTGATGGGGAGGTGTTTGAGCGGCATATGGAGGCTGTGGGGAGGCTTCGCCACCCCAATTTGGTGCCCTTGAGGGCCTATTTTCAGGCCAAGGGAGAGAGGCTTGTCATATACGATTATCAGCCCAATGGCAGCCTCTTCAACCTCGTTCACGGATCAAGATCAGCGAGGGCGAAGCCCTTGCACTGGACATCGTGCTTGAAAATAGCCGAAGATGTGGCACACGGACTTGCTTATATCCATCAAGTTTCGTCTTTAATTCATGGCAACCTAAAATCTTCCAATGTCCTTCTTGGGGTGGACTTTGAAGCTTGTATTACGGACTATTGTTTGGCCTTGTTTGCAGATTCTTCATTCCCTGAAGATCCTGATTCTGCAGCATACAAAGCACCAGAGGCTCGCAAGTCTAGCCGCAGGGCCACCTCCAAGTCTGATGTGTATGCCTTTGGGGTGCTTCTGCTGGAGCTTTTGACGGGTAAACATCCTTCCCAACACCCTTTTCTTGCACCAACGGATTTGCAAGATTGGGTCAGAGCAATGAGGGATGATGATGGTAGTGAAGACAACCGGCTAGAGATGCTCACGGAGGTAGCCAGTATTTGCAGTGCAACCTCGCCGGAACAGAGGCCAGCAATGTGGCAAGTCCTTGAGATGATACAGGGAATAAAGGACAGTGTCACAATGGAGGACACTACGCTTACCGGGCTCTCGTAA 1878 0.566 MHHPKTAAATLVPLFLYLTVAGCAPAPTLPADAVSLLSFKREADQDNKLLYAVNERYDYCEWQGVKCAQGRVVWLVVQSVGLRGPFPADTLTKLDQLRVMSLRNNSLFGPIPDLSPLTNLKSLFLDHNNFSGSFPPSLLLLHRLLTLSLSHNNLSGPLPTQLTLLDRLIALRLDSNSFSGALPPLNHTALKLLNVSNNNLTGPVPVTPSLSRLNAASFSGNPGLCGEIVHRECDPPSHFFGTAPLSQSEQSQGIVVVPSSTKTEHRKKTGLVLGSVVAAVLLAAFALVVVSLVRKKQTGSGKGEVLESADAVEVGSEREVKVRKMEEAHRSGKLVFCCGEVQRYTLEMLMRASAELLGRGSVGTTYKAVLDSRLIVTVKRLDGGKTAGSDGEVFERHMEAVGRLRHPNLVPLRAYFQAKGERLVIYDYQPNGSLFNLVHGSRSARAKPLHWTSCLKIAEDVAHGLAYIHQVSSLIHGNLKSSNVLLGVDFEACITDYCLALFADSSFPEDPDSAAYKAPEARKSSRRATSKSDVYAFGVLLLELLTGKHPSQHPFLAPTDLQDWVRAMRDDDGSEDNRLEMLTEVASICSATSPEQRPAMWQVLEMIQGIKDSVTMEDTTLTGLS 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1856 625 PANTHER LRR RECEPTOR-LIKE KINASE 7 621 - -
Ssu6g1856 625 Pfam Protein kinase domain 354 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1856 625 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 621 - -
Ssu6g1856 625 Gene3D Phosphorylase Kinase; domain 1 315 428 - -
Ssu6g1856 625 Gene3D Ribonuclease Inhibitor 187 236 IPR032675 -
Ssu6g1856 625 Gene3D Ribonuclease Inhibitor 31 186 IPR032675 -
Ssu6g1856 625 SUPERFAMILY Protein kinase-like (PK-like) 355 612 IPR011009 -
Ssu6g1856 625 ProSiteProfiles Protein kinase domain profile. 351 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1856 625 SUPERFAMILY L domain-like 29 226 - -
Ssu6g1856 625 Gene3D Transferase(Phosphotransferase) domain 1 430 622 - -
Ssu6g1856 625 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1856 Ssu-Chr6 32057609 32060412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1856 29 618 Receptor kinase-like Gene Family AT3G50230 53.846 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu6g1856 Pkinase 2.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1856 - - gmx:100786526 969.148