Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1851 ATGGCCGTGGAGCTCATGACGGGTTATAGGAACGACAGTTTCACAACCATAGCGGAAGAGAATGCCGTCCAAGAAGCCGCCTCCGGTTTAGAGAGCGTGGAGAAGCTCATAAGGCTGCTCTCCGAGACCCGCCAACAATACAGCTTTTCGAATCCCAACAATGAAATCGCCGTGGACTGCAAAGCCGTCGCCGACGTGGCCGTCTCCAAGTTCAAGAAGGTGATTTCCCTCTTGGACCGAACCAGAACCGGCCACGCCCGCTTCAGAAGAGCCCCTCTGCCTCCACCCCCGAACCAGACACCACCTTCCGAACCGACACCGTTTCATGCCACCCCTTTGCACCAGATCCCACCCACCCTTCACCAAATCCCCAAAACCGAGAGAAACGCCATCAATGACCCCTCTTCTAAAACCATTCATTTCTCGTACCCCTCCGCTGCTACTTCCTTCATGTCCTCCCTCACCGGCGACGCCGACGCTAAGCAACCGTCCTCGTCGTCGCCGCCTGCCGCGGCGGCGTCTTTTCAGATCAGTCTGTCGCACGTGTCGTCCGCGGGGAAGCCCCCGCTCTCGTCGTCGTCGTTGAAGAGGAAGTGCAGCTCCGAGAACTTGGGTTCCGGCAAGTGTGGTAGCTCCTCTAGCCGCTGTCATTGCTCCAAAAAGAGTAGGAAAATGAGGTTGAAGAGGGTAGTGAGGGTACCGGCTATAAGCTTGAAGCTGGCTGATATTCCACCAGATGATTATTCTTGGAGGAAGTATGGACAGAAACCAATTAAAGGATCACCTCATCCAAGGGGTTACTATAAGTGCAGTAGTGTTAGGGGGTGTCCAGCGCGGAAGCATGTGGAGCGAGCTTTGGATGATCCATCGATGCTGGTGGTTACTTATGAGGGGGAGCATAATCACACTATCTCTGCGCCTGATGCTACTAATCTCATTCTAGAATCGTCTTGA 954 0.544 MAVELMTGYRNDSFTTIAEENAVQEAASGLESVEKLIRLLSETRQQYSFSNPNNEIAVDCKAVADVAVSKFKKVISLLDRTRTGHARFRRAPLPPPPNQTPPSEPTPFHATPLHQIPPTLHQIPKTERNAINDPSSKTIHFSYPSAATSFMSSLTGDADAKQPSSSSPPAAAASFQISLSHVSSAGKPPLSSSSLKRKCSSENLGSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTISAPDATNLILESS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1851 317 MobiDBLite consensus disorder prediction 182 216 - -
Ssu6g1851 317 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 317 IPR044810 GO:0003700
Ssu6g1851 317 Pfam WRKY DNA -binding domain 246 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g1851 317 MobiDBLite consensus disorder prediction 182 217 - -
Ssu6g1851 317 Pfam Plant zinc cluster domain 196 242 IPR018872 -
Ssu6g1851 317 SMART WRKY_cls 244 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g1851 317 MobiDBLite consensus disorder prediction 90 111 - -
Ssu6g1851 317 SUPERFAMILY WRKY DNA-binding domain 242 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g1851 317 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 15 317 - -
Ssu6g1851 317 MobiDBLite consensus disorder prediction 85 111 - -
Ssu6g1851 317 Gene3D WRKY domain 233 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g1851 317 ProSiteProfiles WRKY domain profile. 239 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1851 Ssu-Chr6 32001995 32003320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1851 1 317 WRKY Transcription Factor Family AT2G24570 44.699 6.40e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu6g1851 WRKY 3.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1851 - - gmx:100170685 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1851 6 32001995 32003320 Ssu2g2521 2 84113048 84114445 PCT