Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1847 ATGGACGACCAGATAGAGACCGCAGAAAAAAAGGTGCTGGTTGATATTGTGAAGTTAGCGCAAAAAAGAGGCCTGAAGGGTAAACTGGGAGGCTGGAAAGAGTTCTTGAACAGTCATGACAAAAAGTTCGGGGCAGGTTTGAGTGATCCGTCAAAGAGATCTCATGAGGTATTGACTGCATTTCTAAAGACATTTTCAAAGGAGGAAGATTTGAAGTTTTTTGATAACATCATGCGACATCATTCAAATCAATACATGCTGGAGCAACTGAAAGATAAATCTCATCATTCCCCTGAGCAGGGGCTAGTCCAAGTAACTCTGCAGCATCCGTTATATCCATTGGATTATTCATTTTCATCTATTGATGAGGGATGgatagttataaaatttaaaaacaaacccAAGGTGATGAAGTCTACTGCAATGATTGCTGTTGACTGTGAAATGGTTCTTTGTGAAGATGGGACTGAAGCGTTAGTTAAAGTCTGTGTGGTTGACCATAATTTAGAGGTCAAACTAAATGAACTTGTAAAACCTGACAAAGAAATTGCGGACTATAGAACAGATATTACGGGAGTTTCTTCTCAGGATCTAGAGGCAGTGACTTGCTCCCTGGCTGATATACAGAAATCCATGAAGAAGTTGTTATCACATGGAACCATATTAGTGGGACACAGTTTGCATAATGATCTACGGGTGCTGAAGCTTGACCATATCAGAGTGGTTGACACTTCATATATCTTCCAATCCTCAGATGGATCTATTCACAGGAGACCTTCTTTGAATAGTTTATGTCAGGCTGTGTTGGGCTGTGAAGTTCGGGAAAAGGGTGCTCCGCATAATTGTCTAGATGATGCACGTGCAGCTATGAAACTTGTTCTTGCGAAGATCAAACATGGAGTCGATAGAGAATTTCCAATTCCATTGGTTCAAGAGCATGTTCCAGAAAGTGTGATGGCTAAGCTTCTTCTTCACAATATACCAAGCACTATAAACAATGAAACACTGCATAAAATTGTTCCCGGAGACTTCGAAATAGAACTGAAGCCTTCCAGGAAAGGTCAAGGAGAAAACTATTCTGCCTTAGCTATCTTTAAAAACCCACAAGCGGCGCATGATGCCTATGAAAATGTCCAAGGAAGCCAACTAAAGGTACATATATGA 1164 0.3995 MDDQIETAEKKVLVDIVKLAQKRGLKGKLGGWKEFLNSHDKKFGAGLSDPSKRSHEVLTAFLKTFSKEEDLKFFDNIMRHHSNQYMLEQLKDKSHHSPEQGLVQVTLQHPLYPLDYSFSSIDEGWIVIKFKNKPKVMKSTAMIAVDCEMVLCEDGTEALVKVCVVDHNLEVKLNELVKPDKEIADYRTDITGVSSQDLEAVTCSLADIQKSMKKLLSHGTILVGHSLHNDLRVLKLDHIRVVDTSYIFQSSDGSIHRRPSLNSLCQAVLGCEVREKGAPHNCLDDARAAMKLVLAKIKHGVDREFPIPLVQEHVPESVMAKLLLHNIPSTINNETLHKIVPGDFEIELKPSRKGQGENYSALAIFKNPQAAHDAYENVQGSQLKVHI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1847 387 Pfam Exonuclease 143 292 IPR013520 -
Ssu6g1847 387 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Ssu6g1847 387 CDD REX1_like 143 294 IPR034922 -
Ssu6g1847 387 SMART exoiiiendus 141 302 IPR013520 -
Ssu6g1847 387 PANTHER SMALL RNA DEGRADING NUCLEASE 2 8 384 - -
Ssu6g1847 387 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 8 384 - -
Ssu6g1847 387 CDD RRM_SF 322 384 - -
Ssu6g1847 387 Gene3D - 137 305 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1847 Ssu-Chr6 31934418 31939111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1847 118 238 C2H2 Transcription Factor Family AT3G27970 26.389 9.44e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1847 K14570 - gmx:100785565 662.529