Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1844 ATGAGTCTCCTCTTTCGAGCTCTGATCATCTCATTGGTTCTTCTCCTCGCTGTTGACCAATGTTGCGCTCTAAGTAGAGACGGTGTTCTGTTGCTTTCTTTCAAGTACCGTGTGCTGAACGACCCACTTTACGTCCTGGCGAACTGGAACTACAGTGACGAGACACCGTGTTCGTGGAACGGAGTTTCATGTTCAGCTGTACCAAACGGCACGGAAATTCGCGTGACTTCGTTGTCGCTTCCGAATTCTCAGCTTCTCGGTTCGATTCCCTCCGATCTGGGCTCTATCGAACACCTTCAAGCTTTAGACCTTTCCAACAACTCCCTCAACGGGTCTCTTCCCTCTTCGCTCTCCCAAGCCTCGGAGCTTCGGTTCCTGAACCTGTCCAACAACCTCATAACAGGGGAGGTTCCGGAGTCCATAACGCAGCTTCGGAGTCTCCAGTTCCTTAATCTCTCCGATAACGACTTGGCGGGAAAATTGCCCGACGGTTTGTCCAACATGCAAAACCTAACTCTCGCTTCGTTCAAGAACAATTACTTGTCCGGCTCTCTCCCCAGCGCGCTGCGAACGTTGCGGGTTTTGGATCTGTCCTCGAACCTGTTGAACGGGACTCTCCCCCCGGATTTCGGCGGTGACGCCGTGCGTTACTTGAACATCTCCTACAACAGATTTTCCGGCGAAATCCCGACGGAGTTCGCGGCGAAGATTCCGGGAAACGCCACCGTTGATCTCTCTTTCAACAACCTCACCGGCCAGGTTCCTGACTCCACCGTGTTTGTGAATCAGAATTCGAAGTCGTTCTCTGGCAACAATAATCTGTGCGGAAAACCGACCAAGAATCCGTGTCCCATTCCTTCTTCGCCGTCCTCCGAACCGAAAGTGTCTGATCCTACGTCTCCTCCCGCAATCGCCGCAATGCCGAGGACGTTCGATTCTCCGGCGGCGCCGTCAGGGCAAAAACAGGGCGGCCTCAGGCGAGGAACGATTATCGGAATCGTGGTGGGAGATGTCGTCGGCGTTGGAATCTTGGCCACGCTGTTTGTCTACGTGTACCggttgaagaaaaagaaggacgTGGAGAGCGCGATGAAGAGCGAAGCGGCGGTGGCCAGGAGTGAGAGCTCGTCGTCAACCTCGGAGTCGCGAGGGTTCACGAGGTGGTCGTGTTTGAGAAAAAGAGCGGAAGAGGAAGAGTCCTCGGAGACAACAAGCTCTTCTGATAGTGACGTGGAGGGTGCGGCGCAAGAGGGGCAGAACCAGAACCACAATAAGGGTTCGCAACAAGAGAGCAAAACGGGGACTCTCGTTACCGTCGACGGTGAACGACAGCTTGAGCTCGAAACGCTGCTCAAGGCTTCCGCGTACATATTGGGCGCCACGGGCTCCAGCATAATGTACAAGGCTGTGCTCGAAGACGGCACGTCGTTGGCGGTTCGCAGAATCGGGGAGAGTGGCGTGGAGCGGTTCAAGGATTTCGAGAACCAGGTTCGGGTTATCGCTAAACTGGTGCACCCTAATCTGGTTCGCGTTCGTGGCTTCTACTGGGGACACAATGAGAAGCTCATCATCTATGATTTCGTTCCAAACGGATGCCTTGCCAATGTTCGTTACAGGAAGGTGGGCTCCTCGCCAAGTCATTTACCGTGGGAAATCCGGCTCAAGGTGGCGAAAGGGGTGGCACGTGGGCTGACTTACCTCCACGAGAAGAAGCACGTGCATGGAAACTTGAAGCCTAGCAATATTCTACTGGGCAACGACATGGAGCCCAAGGTTGGAGACTTTGGGCTTGAGAGGATAGTGACGGGTGACACCAGTTATAAGGCTGGCGGATCGGCGCGTATTTTTGGGAGCAAGAGATCCACGGCGTCACGAGATAGTTTCCAAGACATTACGTTTGGGCCCAGCCCAAGCCCGAGCCCGAGCGCAATAAGTGGTGTGTCTCCTTATCATGCTCCCGAGTCGCTCAGGAACCTGAAGCCTCACCCGAAGTGGGACGTGTACTCTTTTGGGGTCATGTTTCTTGAGCTGCTAACGGGGAAGATTGTGGTTTTGGATGATATGGGCCAAGGGCCTGGGGTCTTGGTGGAGGATAAGAACCGGGCCTTGCGCTTGGTTGATATGACTATCCGGGCTGACATGGAGGGTAGGGAGGAGGCCTTGTTGGCCTACTTCAAGCTAGGGTATAGTTGTGTGTCTAGCGTTCCACAGAAAAGGCCTCCAATGAAAGAGGTGCTACAGGTTCTTGAGAAGATCTCATCCTCGTCTTCTTCGTCCTCATATTATTATAGCGTCTAA 2298 0.5339 MSLLFRALIISLVLLLAVDQCCALSRDGVLLLSFKYRVLNDPLYVLANWNYSDETPCSWNGVSCSAVPNGTEIRVTSLSLPNSQLLGSIPSDLGSIEHLQALDLSNNSLNGSLPSSLSQASELRFLNLSNNLITGEVPESITQLRSLQFLNLSDNDLAGKLPDGLSNMQNLTLASFKNNYLSGSLPSALRTLRVLDLSSNLLNGTLPPDFGGDAVRYLNISYNRFSGEIPTEFAAKIPGNATVDLSFNNLTGQVPDSTVFVNQNSKSFSGNNNLCGKPTKNPCPIPSSPSSEPKVSDPTSPPAIAAMPRTFDSPAAPSGQKQGGLRRGTIIGIVVGDVVGVGILATLFVYVYRLKKKKDVESAMKSEAAVARSESSSSTSESRGFTRWSCLRKRAEEEESSETTSSSDSDVEGAAQEGQNQNHNKGSQQESKTGTLVTVDGERQLELETLLKASAYILGATGSSIMYKAVLEDGTSLAVRRIGESGVERFKDFENQVRVIAKLVHPNLVRVRGFYWGHNEKLIIYDFVPNGCLANVRYRKVGSSPSHLPWEIRLKVAKGVARGLTYLHEKKHVHGNLKPSNILLGNDMEPKVGDFGLERIVTGDTSYKAGGSARIFGSKRSTASRDSFQDITFGPSPSPSPSAISGVSPYHAPESLRNLKPHPKWDVYSFGVMFLELLTGKIVVLDDMGQGPGVLVEDKNRALRLVDMTIRADMEGREEALLAYFKLGYSCVSSVPQKRPPMKEVLQVLEKISSSSSSSSYYYSV 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1844 765 Gene3D Phosphorylase Kinase; domain 1 415 527 - -
Ssu6g1844 765 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 755 - -
Ssu6g1844 765 Gene3D Ribonuclease Inhibitor 25 189 IPR032675 -
Ssu6g1844 765 MobiDBLite consensus disorder prediction 627 647 - -
Ssu6g1844 765 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Ssu6g1844 765 PANTHER BNAC07G16060D PROTEIN 8 755 - -
Ssu6g1844 765 Gene3D Transferase(Phosphotransferase) domain 1 529 762 - -
Ssu6g1844 765 CDD STKc_IRAK 458 752 - -
Ssu6g1844 765 MobiDBLite consensus disorder prediction 368 387 - -
Ssu6g1844 765 MobiDBLite consensus disorder prediction 369 386 - -
Ssu6g1844 765 Gene3D Ribonuclease Inhibitor 190 285 IPR032675 -
Ssu6g1844 765 SUPERFAMILY Protein kinase-like (PK-like) 457 753 IPR011009 -
Ssu6g1844 765 Pfam Protein kinase domain 458 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1844 765 MobiDBLite consensus disorder prediction 627 645 - -
Ssu6g1844 765 SMART LRR_typ_2 96 120 IPR003591 -
Ssu6g1844 765 SMART LRR_typ_2 189 212 IPR003591 -
Ssu6g1844 765 SMART LRR_typ_2 144 168 IPR003591 -
Ssu6g1844 765 MobiDBLite consensus disorder prediction 393 436 - -
Ssu6g1844 765 PRINTS Leucine-rich repeat signature 189 202 - -
Ssu6g1844 765 PRINTS Leucine-rich repeat signature 99 112 - -
Ssu6g1844 765 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Ssu6g1844 765 MobiDBLite consensus disorder prediction 271 324 - -
Ssu6g1844 765 ProSiteProfiles Protein kinase domain profile. 452 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1844 765 MobiDBLite consensus disorder prediction 406 436 - -
Ssu6g1844 765 SUPERFAMILY L domain-like 26 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1844 Ssu-Chr6 31881622 31884830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1844 5 763 Receptor kinase-like Gene Family AT4G37250 57.653 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu6g1844 Pkinase 6.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1844 - - gmx:100776204 1209.51