Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1842 ATGCTCCACCACAATAACTCAGCCACAAACCCTTCCTCCTCGTTCCCTTCATCAACAACCATATCACAACCATTACATAAGAGCATGATGGCCGTAACCCGAAAGGACATGGACCGGATCAAGGGTCCATGGAGCCCGGAAGAGGACGACGCCCTGCAGAAGCTGGTGGAGAGGCACGGACCCAGAAACTGGTCGCTAATCAGCAGGTCAATCCCGGGCCGGTCCGGGAAGTCCTGCAGGCTCCGATGGTGCAACCAGCTGTCTCCCCAGGTGGAGCACCGGGCCTTCGCGCCCGAAGAGGACGAAACGATAATCCGGGCCCATGCCCGGTTCGGCAACAAGTGGGCCACCATAGCCCGCCTCCTCTCGGGCCGCACCGATAACGCCATCAAGAACCACTGGAACTCAACCCTAAAGCGCAAGTGCGCCTCCGTCATGATCTCCGACGATCCCGCCAGCGGCGGTTTCAGTCCGCGGCCGCTCAAGCGCTCCGTGAGCGCCGGCGCAGCGGTGCCGCCGGGGAGCCCCTGCAGATCCGATGTGAGCGAGTCCAGCGCTCCCGGCGTGGTCTCCCCTTCGCACGTGTTCCGACCCGTGCCGGTTCGACCTACTGTCGAAACGGCGTCGTCCTGCGACGACGGACCTACCACTTCGCTGTCGCTGTCTCTTCCCGGCGTGGAGTCATCGGAAGTGTCGAATCGTGCGGCGGCCGCGGCGCCGGTGCAGGTGAATCCCGTAGCGGTGGTGCCGGTGGCGGTTCCGGTGGCGGAGGTTGGGCTGGGGGCGTTGAATTTGAGTGCGGAGTTTATGGCGGTGATGCATGAGATGATAAGGAAGGAGGTGAGGAGTTACATGGAGCAGCAGAATGGGATGTGTTTTCAGGGCATGGATGGGTTTAGGAACGTGTCGGTGAAGCGAATTGGGATTAGCAGGGTCGATTCGTAA 945 0.6148 MLHHNNSATNPSSSFPSSTTISQPLHKSMMAVTRKDMDRIKGPWSPEEDDALQKLVERHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFAPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASVMISDDPASGGFSPRPLKRSVSAGAAVPPGSPCRSDVSESSAPGVVSPSHVFRPVPVRPTVETASSCDDGPTTSLSLSLPGVESSEVSNRAAAAAPVQVNPVAVVPVAVPVAEVGLGALNLSAEFMAVMHEMIRKEVRSYMEQQNGMCFQGMDGFRNVSVKRIGISRVDS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1842 314 CDD SANT 43 85 IPR001005 -
Ssu6g1842 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 142 IPR017930 -
Ssu6g1842 314 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Ssu6g1842 314 MobiDBLite consensus disorder prediction 1 25 - -
Ssu6g1842 314 Gene3D - 40 92 - -
Ssu6g1842 314 ProSiteProfiles Myb-like domain profile. 36 87 IPR001005 -
Ssu6g1842 314 PANTHER MYB TRANSCRIPTION FACTOR 30 287 - -
Ssu6g1842 314 SUPERFAMILY Homeodomain-like 38 134 IPR009057 -
Ssu6g1842 314 CDD SANT 98 138 IPR001005 -
Ssu6g1842 314 MobiDBLite consensus disorder prediction 152 196 - -
Ssu6g1842 314 Gene3D - 94 152 - -
Ssu6g1842 314 SMART sant 40 89 IPR001005 -
Ssu6g1842 314 SMART sant 92 140 IPR001005 -
Ssu6g1842 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 91 IPR017930 -
Ssu6g1842 314 Pfam Myb-like DNA-binding domain 95 137 IPR001005 -
Ssu6g1842 314 Pfam Myb-like DNA-binding domain 41 87 IPR001005 -
Ssu6g1842 314 PANTHER MYB PROTEIN-RELATED 30 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1842 Ssu-Chr6 31799386 31800330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1842 33 313 MYB Transcription Factor Family AT4G37260 52.744 2.42e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g1842 Myb_DNA-binding 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1842 K09422 - gmx:100806145 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1842 6 31799386 31800330 Ssu2g2533 2 84338764 84339696 PCT