Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1841 ATGATGGAAGCACTTCCTTACTCAATCCCTTCTACCAAATTGCATTTACTTCATATTTACACCGGTGCTACACGAATTCGATCCTCCAAGCTCCTTCTTCACCCGCCCCAAATTACAATCAAACCTTCATATTCCTCCAAATTTCTCATTTCCCATCACCACAGGCTTCGCTGCGTCGCTGAATCCACCAGTAACCACGACCACAGCCATCGTCTcgaccacgaccacgaccatcacgaccaccaccacaaccatcacgACCACGACCATCAcggccaccaccatcaccaccaccacccgcACGGCACCGATGGTGCTAATCTCACCGGGCCTCAAAAAGCGATTATCGCGTTCGCTAAAGCCACGAGATGGATGGACCTGGCAGATATCCTGAGGGAGCACTTGCATCTATGCTGCTTCTCCACCGCTTTATTTGTGGCCGCCGCCATTTGCCCTCACACCTTGCCTAAGCCACTCGTCAAGCCTTTCCAAAACTCTCTCATTTTCGTCGCATTTCCTTTGGTTGGGGTTTCTGCATCACTTGATGCTCTTATTGAGATCGGTAGTGGAAAGGTGAACATCCATGTATTAATGGCAATGGCAGCCTTTGCATCGATATTTATGGGAAACTCTCTGGAAGGAGGCTTGCTTCTTGCCATGTTTAATCTGGCGCATATAGCCGAAGAGTATTTCACCAGCCGGTCGATGATTGATGTCAAagagttgaaagaaaataatccTGATTTTGCCCTTGTTCTGGATACCAATGATGATAAACTTCCCAATACATTTGACTTGGCATACAAGAGGGTTCCCGTGCATGATGTAACTGTAGGATCATATATTCTGGTTGGTGCTGGCGAGTCTGTGCCAGTAGATTGTGAAGTATTTCAAGGCAGTGCCACAATTACCATCGAGCACTTGACAGGGGAAGTCAAACCTTTGGAAGCCAAAGTTGGAGATAGAATTCCTGGTGGTGCAAGGAACTTAGATGGGAGGATAATTGTAAAGGTAACAAAAACTTGGAAGGAATCAACTCTCAGCAGAATTGTTCAGTTGACTGAAGAAGCACAGTCAAATAAACCTAAACTTCAAAGGTGGCTGGATGAATTTGGTGAACGTTATAGCAAAGTTGTTGTGGTGTTATCAATTGCTATTGCTGTTATTGGGCCACTTATATTTAAGTGGCCATTCATTAGTACATCTGCTTGCAGAGGTTCAATTTACAGAGCCTTGGGGCTTATGGTGGCAGCATCCCCTTGTGCCTTGGCTGTGGCCCCATTGGCATATGCTATAGCAATCAGCACCTGTGCCAGAAAGGGAATATTACTCAAAGGTGGGCATGTTCTGGACGCTCTAGCTTCTTGTCATACTATTGCATTTGACAAAACAGGGACATTGACAACTGGTGGACTTGTATTCAAGGCAATTGAGCCCATTTATGGTCATCACGTTAAAAACAATGAATCGAATGTTTCTTCCTGTTGCATTCCCACATGTGAAAAAGAAGCTCTTGCTGTTGCTGCAGCTATGGAAAAGGGTACTACTCACCCCATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTGTTTCTGTTGAAAGTTTCGAATACTTTCCTGGTAGGGGCGTTACTGCTACTGTTAACAACATTGAGtCAGGAACTGGACTTGCTAAACTACTGAAAGCATCACTTGGGTCTATAGATTTCATCACTTCTTTTTGTCAATCTGAAGATGAGTCAGGAAAGATCAAGGAAGCTGTTAATAAATCTTCTTATGGAAGTGAATATGTTCATGCTGCCCTTTCAGTTAATCAGAAGATAACACTGATTCACCTAGAGGATAGGCCTCGTCCTGGcgtttttaatgttattcaaGAATTGCAAGACGAAGCAAAGTTTCGTGTGATGATGTTAACTGGTGATCATGAGTCTAGCGCAAGGAGAGTTGCAAGTGCTGTGAGCATCAATGAGTTCTATTGCAACCTGAAGCCTGAAGATAAGCTAAGTCATGTAAAAGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTTGGTGAAGGCATCAATGATGCCCCAGCACTTGCTGCTGCAACTGTTGGGATAGTTCTTGCTCACCGTGCTAGTGCAACTGCCATAGCTGTTGCAGATGTATTGTTGCTTAGAGAAAACATTTCTGCAGTGCCATTTTGTATTGCCAAATCTCGCCAAACAACTTCGCTGATTAAACAAAATGTGGCTTTAGCATTGACGTCCATTGTCATTGCTTCCCTTCCATCAGTTTTGGGATTTCTGCCATTGTGGTTAACGGTCCTTTTACATGAAGGTGGAACCCTACTTGTTTGTCTCAATTCCGTACGTGCTCTGAACGAACCAACTTGGTCCTGGAAGCACGATATGTTACATCTGATTAGCGAGGCTAAATCTAGACTCCTGTCTCTTAAGACAAATATCACGGGCTCAAACAGTATCATAACGGCGAATTTGTAA 2505 0.422 MMEALPYSIPSTKLHLLHIYTGATRIRSSKLLLHPPQITIKPSYSSKFLISHHHRLRCVAESTSNHDHSHRLDHDHDHHDHHHNHHDHDHHGHHHHHHHPHGTDGANLTGPQKAIIAFAKATRWMDLADILREHLHLCCFSTALFVAAAICPHTLPKPLVKPFQNSLIFVAFPLVGVSASLDALIEIGSGKVNIHVLMAMAAFASIFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMIDVKELKENNPDFALVLDTNDDKLPNTFDLAYKRVPVHDVTVGSYILVGAGESVPVDCEVFQGSATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRIIVKVTKTWKESTLSRIVQLTEEAQSNKPKLQRWLDEFGERYSKVVVVLSIAIAVIGPLIFKWPFISTSACRGSIYRALGLMVAASPCALAVAPLAYAIAISTCARKGILLKGGHVLDALASCHTIAFDKTGTLTTGGLVFKAIEPIYGHHVKNNESNVSSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVESFEYFPGRGVTATVNNIESGTGLAKLLKASLGSIDFITSFCQSEDESGKIKEAVNKSSYGSEYVHAALSVNQKITLIHLEDRPRPGVFNVIQELQDEAKFRVMMLTGDHESSARRVASAVSINEFYCNLKPEDKLSHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALTSIVIASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNEPTWSWKHDMLHLISEAKSRLLSLKTNITGSNSIITANL 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1841 834 MobiDBLite consensus disorder prediction 83 101 - -
Ssu6g1841 834 Pfam E1-E2 ATPase 268 440 - -
Ssu6g1841 834 SUPERFAMILY HAD-like 458 790 IPR036412 -
Ssu6g1841 834 ProSitePatterns E1-E2 ATPases phosphorylation site. 462 468 IPR018303 -
Ssu6g1841 834 MobiDBLite consensus disorder prediction 66 106 - -
Ssu6g1841 834 SUPERFAMILY Calcium ATPase, transduction domain A 268 353 IPR008250 -
Ssu6g1841 834 Gene3D - 453 741 IPR023214 -
Ssu6g1841 834 SFLD p-type atpase 442 743 IPR044492 -
Ssu6g1841 834 SUPERFAMILY Calcium ATPase, transmembrane domain M 196 775 IPR023298 -
Ssu6g1841 834 MobiDBLite consensus disorder prediction 66 82 - -
Ssu6g1841 834 Gene3D - 233 358 - -
Ssu6g1841 834 SFLD Haloacid Dehalogenase 442 743 - -
Ssu6g1841 834 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 60 820 - -
Ssu6g1841 834 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 194 792 IPR027256 GO:0006812|GO:0016021|GO:0019829
Ssu6g1841 834 PRINTS P-type cation-transporting ATPase superfamily signature 460 474 - -
Ssu6g1841 834 PRINTS P-type cation-transporting ATPase superfamily signature 690 709 - -
Ssu6g1841 834 PRINTS P-type cation-transporting ATPase superfamily signature 636 646 - -
Ssu6g1841 834 PRINTS P-type cation-transporting ATPase superfamily signature 714 726 - -
Ssu6g1841 834 PRINTS P-type cation-transporting ATPase superfamily signature 613 624 - -
Ssu6g1841 834 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 590 770 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu6g1841 834 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 268 485 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu6g1841 834 Gene3D - 471 621 IPR023299 GO:0000166
Ssu6g1841 834 CDD P-type_ATPase_HM 138 792 - -
Ssu6g1841 834 Pfam haloacid dehalogenase-like hydrolase 458 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1841 Ssu-Chr6 31753157 31772114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1841 111 815 Primary Pumps ATPases AT4G37270 76.879 0.0 1104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1841 K01534 - gmx:100776309 1430.23