LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g1838	ATGATTGATTTACCTATTCAAAGCAATTTACGCGAAGGGCTATCTTTAacagaatatataatttcttgctATGGAGCCCGTAAAGGGGTTGTAGATACTGCTGTACGAACATTGGATGTTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTCGAACAGATTGTGGTACCATTCAAGGAATTTCAGTGAATACCCATAATGGAATGATGCCGGaaagaattttgatacaaacattaattggtCGTGTATTAGCAAACGATATATACAGAGGTTCACAATGCATTGCTGTCCAAAATCAAGATATTGGAATTGGACTTATCAATAGATTTAAAACCTTTCAAAGACAACCAATATCTATACGAACCCCCTTTACTTGTAGGAATACATCTTGGATCTGCCGATTGTGTTATGGCCAAAGTCTTACTCATGGCCACTTGGTGGAATTAGGAGAAGCTATAGGCACATCTCCCTACAGCGGAGGTTTGTACTCTCGGGTGTTGGAGACCAAACATAGGCTTAATGTTGGTGGCCAATCTGTCAACGATAGCTTCTTGAGAAAATGGATTCCAGATGATAGTTATCTCACTTATCCAGGGAACGCCAAGAATCGTTCCCGTTACCAGAGTCAGATTGAGTACCGTGTAGGTGATGACGCCGATGGCCCAAACGCAACTAGATTTACTGCGCCAAGTGATGTGTACGGAACTGCTAAAGAGATTAATAACATCTCTGCCAGTGCCGCAGACTATAATCTTTTAAACATAACATGGCGTCTTCCCGTGGACAAGAACATAGATCATCTCCTTCGGCTTCACTTCTGTGACTATTGGAATCCACAAAGTGACCTTACAGTCTTCAATCTGTCCATTTACGACAGGAATGTTATGTTCGTAAATAATGACACCAACGTGTCTAACATTTTGCCTGCcccttatttttatgattttgtggtGCACTCTGATGACTCTGGATTTATGAGGGTCAGCGTAACACCTATTACATCTGTTCCCGTACCTAATGCATTTTTGAACGGGCTAGAAATAATGAAAGTGCTTGAGAAATCAAATACTGTTCCCCCTGACCTGGTATCAGATTCCAAGCATAATCTTCTTCCTGTGGTGCTGGGTTCAGTTCTTGGAGGTTTAGTCCTGGTTTTTGTTGTGGGGGTACTTGGCTTTCTTTGGCGtattaaaatgagaaaggaaaagCCCGTTGAGAATTCGGACTGGTTGCCAATTCCCGCTACTGCTGGAGGGAGTTCTCACAGCAGATTGACTGATTTAACCAGCCAAGGCTCTCCTCTTCCCAACATAAACCTTGGCCTGAAAATTCCCTTGATTGATCTTCAATTGGCAACCAAGAATTTCCACGCAAGTCAGCTAATTGGCAAGGGTGGTTTTGGCAACGTCTATAAGGGAGTTCTCAAGAATGGCATGATAGTGGCTGTGAAAAGAAGCCAGCCAGGATCAGGTCAAGGCCTTCCAGAATTTCAGACAGAGATCATGGTTTTGTCTAAGATTCGTCACAGGCACCTTGTTTCCCTAATTGGGTATTGTGATGAAAGGTTTGAGATGATACTGGTTTATGAGTACATGGAAAAGGGGACACTCAGAGACCATTTGTACAACACAAAATTGCCAAGCTTGACTTGGAAGCAAAGGCTTGAAATTTGCATTGGAGCTGCCAGGGGTCTTCATTACCTTCACAAAGGAGCAGCTGGGGGAATCATTCACCGTGATGTGAAGTCCACAAACATATTGCTTGATGAGAACCATGTTGCTAAAGTTGCTGATTTTGGCCTTTCAAGGTCAGGTCCTCTTGATACTCAACCGTACGTCAGCACTGGTGTTAAAGGCACTTTTGGGTATCTTGATCCTGAGTATTTCAGGTCGCAGCAGCTGACAGAAAAATCTGATGTCTATTCGTTTGGGGTAGTTCTTTTGGAAGTGTTGTGTGCAAGAGCAGTCATTGACCCATCGCTTCCAAGAGAGCAGATAAACTTGGCTGAATGGGGAATGCTTTGCAAAAACAAGGGGATACTCCAAGAGATCATTGATCCTTCCATCAAGGGCCAAATAGATCAAAACTCACTCAGGAAATTTAGTGAGACAGTGGAAAAATGTTTGCAAGAAGATGGTTCTGATAGGCCAACCATGGGTGATGTGTTGTGGGACTTGGAGTATGCGCTGCAGCTTCAGCGAGGTGCAAATGCAGTACATAGAGAGCCGTATGAGGATAGTTCTAGTAGTGTTTCTGCATCACTTCAATTGGCCAATGTTAGGCGCCTTCCTTCACTCTCCACACTAAGTGAAGCGGATGACTCCATTGTGAGGGGTGATGAGTCCGATGGTGCTGCAGATTTGGTTTTCTCTCAGTTGAAAATTGATGACGCCAGATAG	2418	0.4218	MIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTLDVGYLTRRLVEVVQHIVVRRTDCGTIQGISVNTHNGMMPERILIQTLIGRVLANDIYRGSQCIAVQNQDIGIGLINRFKTFQRQPISIRTPFTCRNTSWICRLCYGQSLTHGHLVELGEAIGTSPYSGGLYSRVLETKHRLNVGGQSVNDSFLRKWIPDDSYLTYPGNAKNRSRYQSQIEYRVGDDADGPNATRFTAPSDVYGTAKEINNISASAADYNLLNITWRLPVDKNIDHLLRLHFCDYWNPQSDLTVFNLSIYDRNVMFVNNDTNVSNILPAPYFYDFVVHSDDSGFMRVSVTPITSVPVPNAFLNGLEIMKVLEKSNTVPPDLVSDSKHNLLPVVLGSVLGGLVLVFVVGVLGFLWRIKMRKEKPVENSDWLPIPATAGGSSHSRLTDLTSQGSPLPNINLGLKIPLIDLQLATKNFHASQLIGKGGFGNVYKGVLKNGMIVAVKRSQPGSGQGLPEFQTEIMVLSKIRHRHLVSLIGYCDERFEMILVYEYMEKGTLRDHLYNTKLPSLTWKQRLEICIGAARGLHYLHKGAAGGIIHRDVKSTNILLDENHVAKVADFGLSRSGPLDTQPYVSTGVKGTFGYLDPEYFRSQQLTEKSDVYSFGVVLLEVLCARAVIDPSLPREQINLAEWGMLCKNKGILQEIIDPSIKGQIDQNSLRKFSETVEKCLQEDGSDRPTMGDVLWDLEYALQLQRGANAVHREPYEDSSSSVSASLQLANVRRLPSLSTLSEADDSIVRGDESDGAADLVFSQLKIDDAR	805

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g1838	805	SUPERFAMILY	beta and beta-prime subunits of DNA dependent RNA-polymerase	2	560	-	-
	Ssu6g1838	805	Gene3D	Phosphorylase Kinase; domain 1	430	537	-	-
	Ssu6g1838	805	SMART	serkin_6	462	735	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu6g1838	805	Pfam	Malectin-like domain	170	357	IPR024788	-
	Ssu6g1838	805	Gene3D	-	4	50	-	-
	Ssu6g1838	805	Gene3D	Transferase(Phosphotransferase) domain 1	538	755	-	-
	Ssu6g1838	805	ProSitePatterns	Protein kinases ATP-binding region signature.	468	490	IPR017441	GO:0005524
	Ssu6g1838	805	Gene3D	-	173	358	-	-
	Ssu6g1838	805	ProSiteProfiles	Protein kinase domain profile.	462	735	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ssu6g1838	805	Pfam	RNA polymerase Rpb1, domain 5	13	161	IPR007081	GO:0003677\|GO:0003899\|GO:0006351
	Ssu6g1838	805	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	582	594	IPR008271	GO:0004672\|GO:0006468
	Ssu6g1838	805	PANTHER	OS07G0166700 PROTEIN	165	767	IPR045272	GO:0004714\|GO:0006468
	Ssu6g1838	805	PANTHER	BNAC03G27170D PROTEIN	165	767	-	-
	Ssu6g1838	805	CDD	STKc_IRAK	468	733	-	-
	Ssu6g1838	805	SUPERFAMILY	Protein kinase-like (PK-like)	439	733	IPR011009	-
	Ssu6g1838	805	Pfam	Protein tyrosine and serine/threonine kinase	464	729	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g1838	Ssu-Chr6	31625057	31634802	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g1838	173	805	Receptor kinase-like Gene Family	AT2G23200	49.385	0.0	549

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Ssu6g1838		PK_Tyr_Ser-Thr	6.5e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g1838	-		-	gmx:100305412	1064.29