Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1837 ATGCGGGGCTTAGCTCCTTTCAAGGGTTTGCACTCTTGGGTGTTAGAGACCAAACATAGGCTTAATGTTGGTGGCCAAGCTGTCAACGATAGCTTATTGAGAAAATGGATTCCAGATGATAGTTATCTCACTTATCCAGGAAACGCCAAGAATCGTTCCCCTTTCCTGGGTCAAATTGAGTACCGTGTAAGTGATGACTCCGATGGTCCAAACGCAACTAAATTTACTGCGCCAAGTGATGTGTACGGAACTGCTAAAGAGATTAATAACATCTCTGCCAGTGCCGCAGACtataaacttttaaacataACATGGCGTCTTCCCGTGGACAAGAACATAGATCATCTCCTTCGGCTTCACTTCTGTGACTATTGGAATCCACAAAGTGACCTTACAGTCTTCAATCTGTCCATTTACGACAGGTATGTTATGTTCGTAAATAATGACCCCAACGTGTCTAACATTTTGCCTGCcccttatttttatgattttgtggtGCACTCTGATGACTCTGGATTTATGAGGGTCAGCGTAACACCTATTACATCTGTTCCCGTACCTAATGCATTTTTGAACGGGCTAGAAATAATGAAAGTGCTTGAGAAATCAAATACTGTTCCCCCTGACCTGGTATCAGATTCCAAGCATAATCTTCTTCCTGTGGTGCTGGGTTCAGTTCTTGGAGGTTTAGTCCTGGTTTTTGTTGTGGGGGTACTTGGCTTTCTTTGGCGTATTAAAATGAGGAAACAAAAGCCCGTTGAGAATTCGGACTGGTTGCCAGTTCCCATTACTGTTAGAGGGAGTTCTCACAGCAGATTGACCGAGGGAACCGTCCAAGGCCCTCCTCTTCCCAACATAAACCTTGGACTGAAAATTCCCTTGCTTGATCTTCAATTGGCAACCAAGAACTTCCACGCAAGTCAGCTAATTGGCAAGGGTGGTTTTGGAAATGTCTACAAGGGAGTTCTCAAGAATGGCATGATAGTGGCTGTGAAAAGAAGCCAGCCAGGGTCGGGTCAAGGCCTTCCAGAATTTCAGACAGAGATCATGGTTTTGTCTAAGATTCGTCACAGGCACCTTGTTTCCTTAATTGGGTATTGTGATGAAAACTTTGAGATGATACTGGTTTATGAGTACATGGAAAAAGGGACACTCAGAGACCATTTGTACAATGCAAACTTTCCAAGCTTGTCATGGAAGGAAAGGCTTGAAATTTGCATTGGAGCTGCCAAAGGTCTTCATTACCTTCACAAAGGAGCGGCTGGGGGAATCATTCACCGGGATGTGAAGTCCACAAACATATTGCTTGATGAGAACCATATTGCTAAAGTTGCTGATTTTGGCCTTTCAAGGACAGGTCCTCTTGATCATCAACCGTATGTCAGCACTAGTATTAAAGGCACTTTGGGGTATATTGATCCTGAGTATTTGAGGAAGCAAAAACTGACAGAAAAATCTGATGTCTATTCATTTGGGGTAGTTCTTTTGGAAGTGTTATGTGCTAGACCAGTCATTGATTCATCGCTTCCAAATGAGCAGATAAACTTGGCTGAATGGGGAATGCTTTGCAAAAACAAGGGGATATTCCAAGGAATAATTGATCCTTCCATGAAGGACCAAATAGGTCAAAACTCACTCAGGAAATTTAGTGAGACAGTTGAAAAATGCTTGCAAGAAGTTGGTTCTGATAGGCCAACCATGGATGATGTGTTGTGGGACTTGGAGTACGCGCTGCAGCTTCAGAGAGGTGTTGACGAGGATAGTTCTAGGAGTGCTTCTGCGTCACTTCAATTGCCCAATGTTCCACGTCTTCCTTCATTCTCCACACCAAGTGAAGTGGATGACTTGTCTAAGGTTTTAAACTCCGGCAGCATACTGTGA 1881 0.4296 MRGLAPFKGLHSWVLETKHRLNVGGQAVNDSLLRKWIPDDSYLTYPGNAKNRSPFLGQIEYRVSDDSDGPNATKFTAPSDVYGTAKEINNISASAADYKLLNITWRLPVDKNIDHLLRLHFCDYWNPQSDLTVFNLSIYDRYVMFVNNDPNVSNILPAPYFYDFVVHSDDSGFMRVSVTPITSVPVPNAFLNGLEIMKVLEKSNTVPPDLVSDSKHNLLPVVLGSVLGGLVLVFVVGVLGFLWRIKMRKQKPVENSDWLPVPITVRGSSHSRLTEGTVQGPPLPNINLGLKIPLLDLQLATKNFHASQLIGKGGFGNVYKGVLKNGMIVAVKRSQPGSGQGLPEFQTEIMVLSKIRHRHLVSLIGYCDENFEMILVYEYMEKGTLRDHLYNANFPSLSWKERLEICIGAAKGLHYLHKGAAGGIIHRDVKSTNILLDENHIAKVADFGLSRTGPLDHQPYVSTSIKGTLGYIDPEYLRKQKLTEKSDVYSFGVVLLEVLCARPVIDSSLPNEQINLAEWGMLCKNKGIFQGIIDPSMKDQIGQNSLRKFSETVEKCLQEVGSDRPTMDDVLWDLEYALQLQRGVDEDSSRSASASLQLPNVPRLPSFSTPSEVDDLSKVLNSGSIL 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1837 626 PANTHER OS07G0166700 PROTEIN 12 603 IPR045272 GO:0004714|GO:0006468
Ssu6g1837 626 Gene3D Phosphorylase Kinase; domain 1 278 379 - -
Ssu6g1837 626 Pfam Protein tyrosine and serine/threonine kinase 306 571 IPR001245 GO:0004672|GO:0006468
Ssu6g1837 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Ssu6g1837 626 Pfam Malectin-like domain 13 199 IPR024788 -
Ssu6g1837 626 ProSiteProfiles Protein kinase domain profile. 304 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1837 626 PANTHER BNAC03G27170D PROTEIN 12 603 - -
Ssu6g1837 626 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Ssu6g1837 626 Gene3D Transferase(Phosphotransferase) domain 1 380 595 - -
Ssu6g1837 626 CDD STKc_IRAK 310 575 - -
Ssu6g1837 626 SUPERFAMILY Protein kinase-like (PK-like) 289 575 IPR011009 -
Ssu6g1837 626 Gene3D - 15 200 - -
Ssu6g1837 626 SMART serkin_6 304 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1837 Ssu-Chr6 31613675 31617791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1837 15 611 Receptor kinase-like Gene Family AT2G23200 48.871 2.66e-176 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu6g1837 PK_Tyr_Ser-Thr 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1837 - - gmx:100305412 949.503