Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1836 ATGCTTGTGGACCTCGTGAAAAGTTCCATGTCTCTGAAGAGATATTTGGACTCTATTAACTTGCCATCGTGCCTGCTTCGGCAATTGGTTAAAGAGTACAGACGAAATGGAGAACCATCTACCTACCGCGAAGGTTTGTACTCTCGGGTGTCGGAGACCAAACATAGACTTAATGTTGGTGGCCAAACTGTCAACGATAGCTTATTGAGAAAATGGTTTCCAGATGATAGTTATCTCACTAATCCTGAAAACGCCAAGTATAGTTACCCTTTCCGGGGTCAAATTGAGTACCATGTAGGTGATGACTCCGATGGTCCAAACGCGGCTAAATTTACTGCGCCAAGTGATGTGTACGGAACTGCTAGAGAGATTAATATCTCTGCCAGTGCCGGAGACTTTAACCTTTTAAACATAACATGGGCTCTTCCGGTGGACAAGAACAGAGATCATCTCCTTCGGCTTCACTTCTGTGACTATTGGAATTCACAGAGTGGTCTTACATTCTTCACTCTATACATTTACGACAACTATATTTCGGGGATAAATGGTGACGTACAAGTGTCTAACCAGTTGCCTGCCccttattattatgattttgtgGTTCAATCTGATGACTCTGGATTTATGAGGGTCAGCATAGCTCCTGATGCATCCGCTCCCAAACGTAACGCCTTTTTAAACGGGCTAGAAATAATGGAAATGATCGAGTCATCAAATTCTGTTCCCCCTGACCTGGTGGAATCCGATTCCAAGCACAATCATCTTCCTGTGCAGCTAGGTTCAGTTATTGGAGGTTTAATCGTGGTTTTTGTTGTGGTACTTGGTTTTCGTAAAATGAAGAAGCAAAAGCCCGTTAAGAATTCGGACTGGTTGCCAATTCTCGCTCCTGCTGGAGGGAATTCTCACAATAGATTGACTGAGGGAACCAGCCAAGGCTCTTCTGCTATTCCCAGCATAAACCTTGGACTGAAAATTCCTTTGCTTGATCTTCAATTGGCAACCAATAACTTCCATGCAAATCAGATAATTGGCAATGGTAGTTTTGGTAACGTCTATAAGGGAGTTCTCCAGAATGGCATGATAGTTGCTGTGAAAAGAGGTGAGCCAGGGTCGGGTCAAGGCCTTCCAGAATTTCAGACCGAGATCATGGTTTTGTCCCAGATTCGTCACAGGCACCTTGTTTCCCTAATTGGGTATTGTGATGAAAGGTTTGAGATGATACTGGTTTATGGGTACATGGAAAAAGGGACACTTAGAGACCATTTGTCCAATAAAAACTTGCCAAGCGTGTCTTGGAAGCAAAGACTTGAAATTTGCATTGGAGCTGCCATGGGTCTTCATTACCTTCACGAAGGAGCAGCTGGGGGAATCATTCACCGTGATGTAAAGTCCACAAACATATTGCTTGATGAGAACCATGTAGCCAAAGTTGCTGACTTTGGCCTTTCAAGGACAGGTCCTCATGATCATCAACCGTATGTCACCACTAGTGTTAAAGGCACTTTCGGGTATCTTGATCCCGAGTATTTCAGGTCGCAACAGCTGACAGAAAAATCAGATGTTTATTCATTTGGGGTAGTTCTTTTGGAAGTGTTGTGTGCAAGAGCAGTCATTGACCCATCGCTTCCAACAGAGCAGATAAACTTGGCTGAATGGGGAATGCTTTGCAAAAATAAGGGGATACTCCAAGACATTGTTGATCCTTCCATCAAGGGCCAAATAGATCAAAACTCACTCAGGAAATTTAGTGAGACAGTGGAAAAATGTTTGCAAGAAGATGGTTCTGATAGGCCAACCATGGGTGATGTGTTGTGGGACTTGGAGTATGCGCTGCAGCTTCAGAGAGGTGCTAATGCAATACATAGAGAGCCACATGAGGATAGTTCTAGTAGTGTTTCTGCATCACTTCAATTGTCCAATGTTAGGCGTCTTCCTTCACTTTCCACACTAAGTGAAGTGGTCCAAGTGGATGACTTGTCCATTGCGAGGGGTGATGTGTCCAATTGTGCTGCGGATACCGTTTTCTCTCTGTTGAAAATTGATGACGCCAGATAG 2055 0.436 MLVDLVKSSMSLKRYLDSINLPSCLLRQLVKEYRRNGEPSTYREGLYSRVSETKHRLNVGGQTVNDSLLRKWFPDDSYLTNPENAKYSYPFRGQIEYHVGDDSDGPNAAKFTAPSDVYGTAREINISASAGDFNLLNITWALPVDKNRDHLLRLHFCDYWNSQSGLTFFTLYIYDNYISGINGDVQVSNQLPAPYYYDFVVQSDDSGFMRVSIAPDASAPKRNAFLNGLEIMEMIESSNSVPPDLVESDSKHNHLPVQLGSVIGGLIVVFVVVLGFRKMKKQKPVKNSDWLPILAPAGGNSHNRLTEGTSQGSSAIPSINLGLKIPLLDLQLATNNFHANQIIGNGSFGNVYKGVLQNGMIVAVKRGEPGSGQGLPEFQTEIMVLSQIRHRHLVSLIGYCDERFEMILVYGYMEKGTLRDHLSNKNLPSVSWKQRLEICIGAAMGLHYLHEGAAGGIIHRDVKSTNILLDENHVAKVADFGLSRTGPHDHQPYVTTSVKGTFGYLDPEYFRSQQLTEKSDVYSFGVVLLEVLCARAVIDPSLPTEQINLAEWGMLCKNKGILQDIVDPSIKGQIDQNSLRKFSETVEKCLQEDGSDRPTMGDVLWDLEYALQLQRGANAIHREPHEDSSSSVSASLQLSNVRRLPSLSTLSEVVQVDDLSIARGDVSNCAADTVFSLLKIDDAR 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1836 684 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Ssu6g1836 684 Gene3D - 50 235 - -
Ssu6g1836 684 PANTHER BNAC03G27170D PROTEIN 42 643 - -
Ssu6g1836 684 Gene3D Transferase(Phosphotransferase) domain 1 413 631 - -
Ssu6g1836 684 SUPERFAMILY Protein kinase-like (PK-like) 317 608 IPR011009 -
Ssu6g1836 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Ssu6g1836 684 Gene3D Phosphorylase Kinase; domain 1 301 412 - -
Ssu6g1836 684 ProSiteProfiles Protein kinase domain profile. 337 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1836 684 SMART serkin_6 337 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1836 684 Pfam Malectin-like domain 53 233 IPR024788 -
Ssu6g1836 684 Pfam Protein tyrosine and serine/threonine kinase 339 604 IPR001245 GO:0004672|GO:0006468
Ssu6g1836 684 PANTHER OS07G0166700 PROTEIN 42 643 IPR045272 GO:0004714|GO:0006468
Ssu6g1836 684 CDD STKc_IRAK 343 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1836 Ssu-Chr6 31595298 31598292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1836 53 684 Receptor kinase-like Gene Family AT2G23200 47.095 3.66e-178 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Ssu6g1836 PK_Tyr_Ser-Thr 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1836 - - gmx:100305412 967.992