Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1830 ATGACCTTCATCAGGGAGGATGATGTTGATGATCATGTGTCAATCAATGACAATCATGTGGATGGTGAACCACACAACAATGCCAACTATGAAATTGTGACCCCTGAAGGTGATAACTTAGGAGAATGGTTGAGTTTAGGCCTCAAAGGAGACATGCCTCTTGAAACAGCAGAACAAAACCCAGATTCCCAATCATCAAAACCTCTCCACCACAACAAGGTGTTCTCGTGCAACTTCTGCATGAGAAAGTTTTACAGTTCACAAGCCTTAGGGGGTCACCAGAATGCACACAAGAGGGAAAGAGAAGCAGCTAGAAGTTACCAATCTCATAGGATGATGACAACATCATCAATGGGGCCTGCTTACTCTTCTCTGGCATCTCGGTCACTGGGAATACAGCCTCACTCGCTTGTGCACAAGCCAGGCAGAGAAAGGCCCGCTATGGTGGCTAGATTCAGTGATGCCAACAGTTATGGGATTGGAATGGCATCATCATGGACACCCCTTGTGCTTGAACAAGCTGTGGACTTCTATTGGCCAGGTAGCTTTCGGTTGGACTTGCCAAAGCAAGAATCAGATGTTAATAAGATTGACTTAGATCTTCGGCTGTGA 612 0.4592 MTFIREDDVDDHVSINDNHVDGEPHNNANYEIVTPEGDNLGEWLSLGLKGDMPLETAEQNPDSQSSKPLHHNKVFSCNFCMRKFYSSQALGGHQNAHKREREAARSYQSHRMMTTSSMGPAYSSLASRSLGIQPHSLVHKPGRERPAMVARFSDANSYGIGMASSWTPLVLEQAVDFYWPGSFRLDLPKQESDVNKIDLDLRL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1830 203 MobiDBLite consensus disorder prediction 1 19 - -
Ssu6g1830 203 MobiDBLite consensus disorder prediction 1 26 - -
Ssu6g1830 203 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Ssu6g1830 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Ssu6g1830 203 PANTHER ZINC FINGER PROTEIN 4-LIKE 1 203 - -
Ssu6g1830 203 Gene3D Classic Zinc Finger 56 125 - -
Ssu6g1830 203 PANTHER ZINC FINGER PROTEIN 4-LIKE 1 203 - -
Ssu6g1830 203 SUPERFAMILY beta-beta-alpha zinc fingers 71 102 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1830 Ssu-Chr6 31461650 31462261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1830 60 194 C2H2 Transcription Factor Family AT1G24625 42.857 1.40e-24 94.4