LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g1826	ATGTCTCGGAACCCCCAAGAGCAGCCACTGTTAGTGGACTCGTTCCGGGAAGAAGAGGAACCACGAGAGACGGCTTACGATTCCTCGGAGAAGATCGTGGTGGTTGGAGTCGACGAGTCGGACAGCGAGGAGAACTGGGGGCGAGTGCCGCCGTTCTCGTGGAAGAAGCTATGGCTGTTTACTGGGCCGGGCTTTCTGATGAGCATAGCGTTTCTGGACCCAGGGAACTTGGAGGGGGACCTTCAGGCGGGTGCCATTGCTGGGTACTCGCTGCTGTGGCTTCTGATGTGGGCCACGGCCATGGGCCTCTTGATCCAGCTCCTGTCGGCGCGGCTCGGCGTGGCCACGGGGAAGCACCTCGCCGAGCTCTGCAGGGAGGAGTACCCGACGTGGGCCCGGATGGTGCTTTGGATTATGGCTGAGCTTGCTCTCATTGGCTCCGATATTCAAGAGGTTATTGGGAGCGCTATTGCCATCAGAATTCTCAGTCATGGGGTTATCCCCCTTTGGGCTGGGGTCGTTATTACTGCTCTTGATTGttttatttttctctttcttgagaACTATGGCGTGAGGTCATTGGAAGCTTTTTTTGCTGTTCTCATTGGTGTAATGGCAATCTCGTTTGCGTGGATGTTTGGTGAAGCAAAGCCCAGTGGCAAGGAACTTCTTCTTGGCATTTTGATTCCAAAACTCAGCTCCAAAACTATACAACAGGCTGTTGGAGTTGTGGGGTGCCTTATTATGCCTCACAATGTGTTCTTGCACTCTGCTCTTGTTCAGTCAAGGCAGGTTGACCGCAGCAAGAAAGGCCGGGTTCAAGAAGCTCTTAATTATTACTCTATTGAGTCCACCCTTGCCCTTATAGTCTcctttatcataaatatatttgtcaCAACTGTGTTTGCTAAGGGGTTTTATGATACTCAACTTGCAAACAGCATTGGTCTTGCAAATGCAGGACAGTATCTTCAGGAGACGTATGGGGGTGGACTATttccaatattatatatatggggtATTGGGTTATTAGCAGCAGGTCAAAGTAGCACTATTACTGGTACTTATGCTGGACAATTCATCATGGGaggttttctaaatttaaggttaaaaaagtgGATAAGGGCATTGATTACCCGAAGTTGTGCAATAATTCCAACCATGATAGTGGCTCTTATATTTGATACCTCAGAGGAATCGTTAGATGTGCTGAATGAGTGGCTTAATGTTCTTCAGTCAGTCCAAATCCCCTTTGCCCTAATTCCCTTGCTTTGTCTGGTGTCAAAGGAGCAGATAATGGGCACTTTCAGAATTGGTGCTGTCCTCAAGATTATTTCATGGCTTGTGGCTGCTCTGGTAATAGTGATTAATGGCTATCTTTTGACGGAATTCTTTTCCTCTGAAGTGAATGGACCAATGTTTGGCGCTGTGGTGGGTGCAATAACTACTGCATATGTTGCATTCATAGTATACCTTATTTGGCGGGCCATCACCTTTTTACCTTGGCAAAGCGTAACGCGACCAAAGACAATTGCTCACTCAGAGAGTTGA	1551	0.4616	MSRNPQEQPLLVDSFREEEEPRETAYDSSEKIVVVGVDESDSEENWGRVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPTWARMVLWIMAELALIGSDIQEVIGSAIAIRILSHGVIPLWAGVVITALDCFIFLFLENYGVRSLEAFFAVLIGVMAISFAWMFGEAKPSGKELLLGILIPKLSSKTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDRSKKGRVQEALNYYSIESTLALIVSFIINIFVTTVFAKGFYDTQLANSIGLANAGQYLQETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRALITRSCAIIPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFRIGAVLKIISWLVAALVIVINGYLLTEFFSSEVNGPMFGAVVGAITTAYVAFIVYLIWRAITFLPWQSVTRPKTIAHSES	516

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g1826	516	MobiDBLite	consensus disorder prediction	1	24	-	-
	Ssu6g1826	516	PRINTS	Natural resistance-associated macrophage protein signature	240	263	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu6g1826	516	PRINTS	Natural resistance-associated macrophage protein signature	166	185	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu6g1826	516	PRINTS	Natural resistance-associated macrophage protein signature	136	162	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu6g1826	516	PRINTS	Natural resistance-associated macrophage protein signature	347	366	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu6g1826	516	PRINTS	Natural resistance-associated macrophage protein signature	375	392	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu6g1826	516	PRINTS	Natural resistance-associated macrophage protein signature	191	212	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu6g1826	516	PRINTS	Natural resistance-associated macrophage protein signature	409	428	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu6g1826	516	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	55	433	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu6g1826	516	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	16	515	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu6g1826	516	Pfam	Natural resistance-associated macrophage protein	78	439	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu6g1826	516	Hamap	Divalent metal cation transporter MntH [mntH].	43	465	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Ssu6g1826	516	PANTHER	METAL TRANSPORTER NRAMP3 PROTEIN	16	515	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g1826	Ssu-Chr6	31406608	31410199	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g1826	31	502	Inorganic Solute Cotransporters	AT2G23150	80.211	0.0	787

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g1826	K21398		-	gmx:100812381	959.133

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu2g2539	2	84476787	84479973	Ssu6g1826	6	31406608	31410199	PCT