Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1805 ATGTGTAGTTTTCGCTATACACGCGTTAAGTATGCGCACGAACCACCATCACTACTTCTCCGCGTCTTGCTAGTGTGCACCCTTGTCGCCTTGCGTGCGCCGGTTGCGCAACCCCCTATCGTGCGCATCCCCACCGACCTCATCGAAACTAACACCACCCCAATCGTTCACCAGCGCCACAGAACCCAGATCTCGGGTTCCAATCGCCGAGGCATGTCGAAGGCGCGTGTTTACACCGATGTCAACGTTCTTCGCCCCAAAGAGTACTGGGATTACGAGTCTCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGAAAAGTTGGAAGGGGGAAGTATAGTGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGCTGTGTAATCAAGATTCTCAAGCCtgtcaagaaaaagaagattaaaagagagataaaaatactTCAGAACCTTTGTGGGGGGCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACACTCTAAAACTCCTAGCTTAATATTTGAGTATGTCAACAgtacagattttaaagttttgtaTCCAACCTTGACTGATTATGACATACGCTATTACGTATATGAGCTTCTTAAGGCCTTAGATTACTGCCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATAGATCATGAATTACGAAAACTTCGATTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATACAATGTTCGTGTGGCTTCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGTCTTGGCTGCATGTTAGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCATATCTGAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCACTAGTTGGAAGGCACAGTCGCAAGCCTTGGTCTAAATTTATCAATGCAGATAATCAACATCTGGTCTCTCCAGAGGCAATCGATTTTCTTGATAAGCTCCTTCGATACGATCACCAGGACAGGCTAACGGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAAGTAAGGGCAGCTGAAAGTAGCAGAATGAGGACACAGTAA 1215 0.4214 MCSFRYTRVKYAHEPPSLLLRVLLVCTLVALRAPVAQPPIVRIPTDLIETNTTPIVHQRHRTQISGSNRRGMSKARVYTDVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYVYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMLAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1805 404 ProSiteProfiles Protein kinase domain profile. 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1805 404 SMART serkin_6 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1805 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Ssu6g1805 404 Gene3D Transferase(Phosphotransferase) domain 1 182 390 - -
Ssu6g1805 404 Gene3D Phosphorylase Kinase; domain 1 105 181 - -
Ssu6g1805 404 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Ssu6g1805 404 PANTHER CASEIN KINASE II SUBUNIT ALPHA 17 404 IPR045216 GO:0004674|GO:0006468
Ssu6g1805 404 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 17 404 - -
Ssu6g1805 404 CDD STKc_CK2_alpha 86 390 IPR045216 GO:0004674|GO:0006468
Ssu6g1805 404 Pfam Protein kinase domain 105 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1805 404 SUPERFAMILY Protein kinase-like (PK-like) 76 394 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1805 Ssu-Chr6 31032597 31039137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1805 103 390 Core Cell Cycle Gene Families AT1G76540 29.126 1.02e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Ssu6g1805 Pkinase 3.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1805 K03097 - gmx:100819679 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2558 2 84700507 84705965 Ssu6g1805 6 31032597 31039137 PCT