Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1797 AtgaacaaaaaccaaattcctAGGACTAGGCCATGGCCTGCAGGGTTCCCTACCTCCAAGGCCCTAACCAACTTCGGTGACGCCAACTGCATGGAACAGTTACTTGTTCACTGTGCCAACGCAATAGAGAGCAACGATGTAACTCTGGCTCAACAAATCCTTTGGGTCCTAAACAACATAGCACCCCCTGACGGTGACTCCAACCACCGCCTAGCCTCTAGCTTCCTCCGCGCCCTCACCGCTCGCGCGGCCAAAATGGGAACCTGCAAGATGCTCGTAGCCGTAGCAGACACGCGCAACCACCTCACCATAGACACGCACAAATTCTCGGTCATCGAACTTGCTAACTTCGTGGACTTAACCCCGTGGCATCGCTTCGGCTTCACGGCGGCCAACGCCGCCGTCCTAGAAGCCACCGAGGGATTCTCCGTCATCCACATCGTGGACTTAAGCTTGACACATTGCATGCAGATTCCCACGCTGATCGACGCCATCGCTAGCCGCCACGATGCGCCGCCTCTAATCAAACTCACCGTGGCTGATGCTAGCTGCAGGGACATCCCACCTGTTCTTGACCTCTCCTACGACGAACTTGGCGCCAAGTTGGTCAATTTCGCTAGGTCGAGAAACGTGATCATGGAATTCAGAATGGTTGCTTCGAGTTACGAAGACGGGTTTGCGGGTTTGATCGAACAGTTGAGAGTGCAACAACAGCATTTGGTTTATGCCGCAGAACCTCGTCCAAGTGAAGCTTTGGTTATAAACTGTCACATGATGCTTCATTATATACCTGATGAAACCCTATCTGTGATTCATGAAACAGACTTAACCTCTTATGTCTACGATTCGTCTTCTTCTGCTGCTGCTGCTTCTGTTGTTACTTCGACTTCGTCGCTAAGATCGTTGTTCCTTAAATCCCTGCGGAGTTTAGACCCAACCGTTGTCATTTTGGTTGATGAAGATGCAGATTTGACATCTAACAACTTGGTTTGCAGACTGAGATCTGCGTTTAACTATCTATGGATACCTTATGACACTGTGGACACGTTCTTGCCGCGAGGGAGCAAGCAAAGGCAGTGGTACGAAGCAGACATTTGCTGGAAGATTGAGAATGTGATAGCACGTGAAGGGGTTCAGAGGGTGGAGCGTGTTGAGCCCAAGAACAGGTGGGAGCAGCGAATGAAGAATGCAAACTTTCAGGGGGTCGCTTTCAGTGAGGATTCTGTTGCGGAGGTGAAGGCAATGCTCGATGAACATGCTGCTGGATGGGGATTGAAGAAGGAAGATGAACACATTGTGCTCACTTGGAAAGGACACAATGTGGTCTTTGCCTCTGCTTGGTTACCTGCTTGA 1353 0.4996 MNKNQIPRTRPWPAGFPTSKALTNFGDANCMEQLLVHCANAIESNDVTLAQQILWVLNNIAPPDGDSNHRLASSFLRALTARAAKMGTCKMLVAVADTRNHLTIDTHKFSVIELANFVDLTPWHRFGFTAANAAVLEATEGFSVIHIVDLSLTHCMQIPTLIDAIASRHDAPPLIKLTVADASCRDIPPVLDLSYDELGAKLVNFARSRNVIMEFRMVASSYEDGFAGLIEQLRVQQQHLVYAAEPRPSEALVINCHMMLHYIPDETLSVIHETDLTSYVYDSSSSAAAASVVTSTSSLRSLFLKSLRSLDPTVVILVDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAREGVQRVERVEPKNRWEQRMKNANFQGVAFSEDSVAEVKAMLDEHAAGWGLKKEDEHIVLTWKGHNVVFASAWLPA 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1797 450 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 9 448 IPR005202 -
Ssu6g1797 450 PANTHER SCARECROW-LIKE PROTEIN 32 9 448 - -
Ssu6g1797 450 Pfam GRAS domain family 31 447 IPR005202 -
Ssu6g1797 450 ProSiteProfiles GRAS family profile. 22 448 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1797 Ssu-Chr6 30804297 30805649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1797 13 449 GRAS Transcription Factor Family AT3G49950 58.277 1.27e-180 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu6g1797 GRAS 1.5e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1797 - - gmx:100814364 741.88