Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1795 ATGAGTTGCAACGGGTGCCGCGTTCTTCGAAAGGGGTGCAGCGAGTCCTGTGTGTTGCGCCCTTCTTTGCAGTGGATCGATAGCGCCGAAGCCCAAGGCCACGCCACTGTCTTCGTAGCCAAATTCTTTGGCCGTGCTGGCCTCATGTCTTTCATTTCCAACGTGCCCGAAAATCAAAGACCtgCTCTGTTTCAGTCCCTGCTGTTCGAAGCCTGCGGGAGAACGGTGAACCCCGTGAACGGCGCCGTGGGACTTCTCTGGGCCGGAAACTGGCATGTGTGCCAGGCAGCGGTGGAGACGGTTCTCCGCGGTGGCACGCTCCGGCCTATGCCGGAACTCATGGGCCTCGATGCTGCGGTCGCCGCCACCGACGAGGCATCAGAGGCAGAAGTCGCCTGCACCGACATTTGGAGGATCCGAGACCCGAACCCGAATTGCCGGTTCACGAGTTCGCGATCTCATAACAAGGTCTCCTCCGGCGGCAAACGCAAGCGGTCGGAGGAGCTCGCGAAGCTTCAGGCCGCGCCGAATCTTGATCTCCGGCTGACGCCGATTATCCTGCAGAGGATCGAGAGCCGCCGGTCGGGGTCGCCGTCGATGACGTCCGAGGAGTCCGGCACAACGACGGCGGTTTTGGAGAGCGGGTTTGCGGATCAGTGGGGCCACGGCGGAGACCAGAAGGTTCTCAACCTTTTCATTTGA 702 0.6097 MSCNGCRVLRKGCSESCVLRPSLQWIDSAEAQGHATVFVAKFFGRAGLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWAGNWHVCQAAVETVLRGGTLRPMPELMGLDAAVAATDEASEAEVACTDIWRIRDPNPNCRFTSSRSHNKVSSGGKRKRSEELAKLQAAPNLDLRLTPIILQRIESRRSGSPSMTSEESGTTTAVLESGFADQWGHGGDQKVLNLFI 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1795 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 233 - -
Ssu6g1795 233 MobiDBLite consensus disorder prediction 147 168 - -
Ssu6g1795 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 233 - -
Ssu6g1795 233 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Ssu6g1795 233 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1795 Ssu-Chr6 30763597 30764390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1795 1 233 AS2 family AT4G37540 55.777 1.29e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu6g1795 LOB 4.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1795 - - gmx:100816480 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1795 6 30763597 30764390 Ssu2g2564 2 84832039 84832838 PCT