Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1793 ATGGCCCTAAGGCCCTTCCAATTCAACTTCTCGCGCGATAGATTGCTCTTTCTCCTCCGCTCCTCTCTATCTCATTCATTTCCCTCTTCTCTCCGCTCTCCCAATTTCCCCCAAACTTTACCCCCCGCTTTCTCCTTCCGCCACTTCGCCGCCGCCCCTCTGGCACGccctccgccgccgccgccgccgctcGACGCCATGGCACAAAAAATCGGAAAGTCCACGCGCCGCCCCGGCGCCTCCTCTAAGGCCATGGTTTATGCCGATGTTAACGTTGTTCGTCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGGGAGCAAGATGATTATGAGGTGGTGAGGAAGGTGGGTAGGGGGAAATACAGCGAGGTGTTCGAAGGTGTTCACTGCACGGATGGTGAGAAATGCATCATCAAGATCCTGAAACccgtgaagaagaagaagATCAAGAGGGAAATCAAAATATTACAGAATCTTTGTGGAGGGCCTAATATTGTAAAGTTGCTTGACATTGTTAGAGACCAGCAGTCGAAGACCCCAAGtcttatatttgaatatgtcaATAACACTGATTTTAAAGTGCTTTATCCTACATTGTCAGACTATGATATACGCTATTATATTTATGAACTTCTGAAGGCACTGGATTATTGCCATtcacaaggaatcatgcatcgGGATGTGAAACCACATAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGGCTTGCAGAGTTCTATCATCCTGGGAAAGAGTATAATGTTCGTGTGGCTTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTCGATCTTCAAGACTATGATTACTCTCTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGGATGaTATTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAAATAGCTAAGGTACTTGGGACAGATGAATTGAGTGCATATTTGGATAAGTATCAAATAGAGTTGGACCCGCATCTTGCAGCACTTATTGGGAGGCACAGCCGTAAGCCATGGGCAAAGTTCATTAGTGTAGAAAATCATCACTTGGCTGTTCCTGAGgccGTTGACTTTGTTGACAAGTTACTACGCTATGATCATCAAGAACGTCCCACTGCAAAAGAAGCCATGGCCCATCCATACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTACACATTGA 1242 0.4211 MALRPFQFNFSRDRLLFLLRSSLSHSFPSSLRSPNFPQTLPPAFSFRHFAAAPLARPPPPPPPLDAMAQKIGKSTRRPGASSKAMVYADVNVVRPKEYWDYESLNVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDGEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELSAYLDKYQIELDPHLAALIGRHSRKPWAKFISVENHHLAVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPVRNAESSRTRTH 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1793 413 MobiDBLite consensus disorder prediction 393 413 - -
Ssu6g1793 413 PANTHER CASEIN KINASE II SUBUNIT ALPHA 53 405 IPR045216 GO:0004674|GO:0006468
Ssu6g1793 413 SMART serkin_6 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1793 413 Pfam Protein kinase domain 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1793 413 CDD STKc_CK2_alpha 95 399 IPR045216 GO:0004674|GO:0006468
Ssu6g1793 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Ssu6g1793 413 Gene3D Transferase(Phosphotransferase) domain 1 191 399 - -
Ssu6g1793 413 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Ssu6g1793 413 Gene3D Phosphorylase Kinase; domain 1 114 190 - -
Ssu6g1793 413 PANTHER BNAA04G13490D PROTEIN 53 405 - -
Ssu6g1793 413 ProSiteProfiles Protein kinase domain profile. 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1793 413 SUPERFAMILY Protein kinase-like (PK-like) 86 403 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1793 Ssu-Chr6 30716350 30727103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1793 112 407 Core Cell Cycle Gene Families AT1G20930 29.841 1.33e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Ssu6g1793 Pkinase 1.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1793 K03097 - gmx:100776388 720.309