Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1790 ATGAaagctcatcaccatcatttGAGCCTCTTTTTGATCATATCATTGTTTCTATTCACTCCAGTCCCCACTGCCAAAGCTATCAACACAACTCAATTCCCCACTCCCAATGAAACAAGAAGGATCCTCCACCAGCCTCTGTTCCCGGAGGTTTCAGCTCCGCCGCCAACCACCCccccgccgccgccgccgccggaCATTCCATCGTCTCCCGACATTCCTTTCTTCAACGAGTATCCCGCGGGGCCGCCGCCGCCGGAGCAGAATCTGCCGCCGGCGACAACCTCCACCGGCGCGATGGCGAACCCGACGGCGACGCAGCCCACGAAGCCGGCGAAGAAGGTGGCGATTGCGATCTCCGTGGGAATCGTGACGCTGGGAATGTTCTCCGCATTGGGCTTCTTCTTATACCGGCACAGGACGAACCACCCCGCGGAGACCCACAAACTCGTCTCCCGGAGAGTTCTAGAAGATTCTCCGCGGGCCCCACCGCCCTCGACCTTCCTCTACATTGGGACCGTGGACCCCGCCAGAACGTCACCGGGCGAACCCAACGGAACAAACTGTAACACTTCGCCTTATCGAAAGCTTAATTCCGTTAAGCTTAACTCCGATCACCGTTACCGCCCCAGTCCCGAGCTGCAGCCGCTGCCGCCGCCGAACAAGCCGCCCGACGAGAGCAGCTCGCCGGCGGCGGAATTCTCCGACTCCTCGTCTTCCGAGGAGGAAAGCTGCCAGACGGCGTTTCACTCGCCGCACGGCTCGTCGCTCGGCCGGGAAGAGAATTTTTTCACGCCGGTTTCGCGCCACAGCTGTCTCTCCGCCGCCGCGGCCGCAGCTCCGGCGGTTCCTTTTTCTAAGAGAACTTCGCCGAAATCCCGGTTTTCTGCTCCGTCGCCGGATATCGGAAACATAGTCGTACCTCCGGCGCCTGCAGCTTCAACTAAATATCACCACGTGGAGAAAGAAGTGAGTTCCGGTCCTTCTAGAAGGCTGAAATTCTCGTCGCCTCCCCCAGCACCGAATTTGACTTATCTTCATTCAAACGTGTTAACGACTTCACTTaaacctcctcctcctcctccaccaccgCCGCTGCCGTCGCGGAAGGGTTGGTCTCCGTCTATTAGCGCATCTTCGTCCTCTGTGTCAAGGAAGCACCGAGAGTCTTGGTCTCCCAGTGAAGGAGGGTCTTCTGCTAACAGTGTTAGTGTAAGGAAAGGTTCTTCAGGGGAAGTTGACAAAAGGCAGGCAGGTGATGACGTGGACTGGGCGAAACCCAAGTTGAAGGCTCTGCATTGGGATAAAGTGAGTGCTACTTCGGACCGTGCCACTGTGTGGGACCAGTTGAAATACAGCTCCTTTCAgttaaatgaGGATATGATGGAGACCTTGTTTGGCTGCAAATCCACAGGTTCTGCCTTTAAAGAGACTGCTACTAGAAAATCGGTTCTTCCTCCTGTTGAGCAGGAGAATAGGGTGTTAGACCCCAAGAAATCCCAAAACATAGCTATACTACTCAGGGCACTCAATGTGACAAGAGATGAGGTGTGCGAAGCTCTTTTAGATGGGAATCCTGAAGGTTTGGGAACTGAGCTATTGGAGACTCTAGTAAAGATGGCTCTAACAAAGGAGGaagaaataaaacttaaaaattatgatgGTGACCTCTCAAGACTTGGGTCTGCAGAAAGATTTCTTAAAGCAGTGCTTGATATCCCTTTAgcttttaaaagaattgaagCCATGCTGTACAGAGCTAATTTTGAGACTGAAGTTAACTACCTTAGGAAGTCCTTTCAGACCTTGGAGGCAGCAAGTGAGGAATTAAAGAACAGTCGGTTATTCCTCAAACTTCTTGAAGCTGTTCTAAGGACCGGAAACAGAATGAATGTTGGCACCAATCGTGGTGATGCTAAATCTTTCAAACTGGACACACTTCTAAAACTTGTAGACATAAAGGGCACAGATGGGAAGACAACACTGCTCCACTTTGTGGTCCAAGAGATCATTAGATCTGAAGGTACAGGTGGTGAATCTGCAAATGAGAATGTTCAAAACCAAACAACTTCCCAATTCAATGAGGATGAGTTCAGAAAGAAAGGATTGCAGGTTGTGGCCGGACTGAGTAGAGACCTTGGTAATGTCAAAAAGGCAGCAGGAATGGACTCGGATGTTTTAAGCAGCTATGTCTCAAAGCTTGAAATGGGACTTGATAAAGTGAGATTAGTTTTGCAATGTAGAAAGCCAGATATGCACGGGAATTTCTTTAACTCAACTGGGCTATTTCTGAAAGATGCTGAAGAGGAAATTGTTAGGATCAAGGCTGATGAGAGAAAGGCCTTATTCCTTGTGAAAGAAGTTACAAAATACTTTCATGGGGATGCAGCAAAGGAAGAAGCGCACCCTTTCAgaatttttatgattgtaaGAGACTTTCTAAACATTTTGGATCAAGTCTGCAAAGAAGTGGGAAGGATGCAGGATAGAACTGTGATTGGTTCAGCTAGATCCTTCAGGATAGCCGCAAGTGCATCATTACCTGTTCTCAACAGGTACCATGCAAGACAAGATAGAAGTTCAGATGAGGAAAGCTTATCCCCCTAG 2607 0.4768 MKAHHHHLSLFLIISLFLFTPVPTAKAINTTQFPTPNETRRILHQPLFPEVSAPPPTTPPPPPPPDIPSSPDIPFFNEYPAGPPPPEQNLPPATTSTGAMANPTATQPTKPAKKVAIAISVGIVTLGMFSALGFFLYRHRTNHPAETHKLVSRRVLEDSPRAPPPSTFLYIGTVDPARTSPGEPNGTNCNTSPYRKLNSVKLNSDHRYRPSPELQPLPPPNKPPDESSSPAAEFSDSSSSEEESCQTAFHSPHGSSLGREENFFTPVSRHSCLSAAAAAAPAVPFSKRTSPKSRFSAPSPDIGNIVVPPAPAASTKYHHVEKEVSSGPSRRLKFSSPPPAPNLTYLHSNVLTTSLKPPPPPPPPPLPSRKGWSPSISASSSSVSRKHRESWSPSEGGSSANSVSVRKGSSGEVDKRQAGDDVDWAKPKLKALHWDKVSATSDRATVWDQLKYSSFQLNEDMMETLFGCKSTGSAFKETATRKSVLPPVEQENRVLDPKKSQNIAILLRALNVTRDEVCEALLDGNPEGLGTELLETLVKMALTKEEEIKLKNYDGDLSRLGSAERFLKAVLDIPLAFKRIEAMLYRANFETEVNYLRKSFQTLEAASEELKNSRLFLKLLEAVLRTGNRMNVGTNRGDAKSFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGTGGESANENVQNQTTSQFNEDEFRKKGLQVVAGLSRDLGNVKKAAGMDSDVLSSYVSKLEMGLDKVRLVLQCRKPDMHGNFFNSTGLFLKDAEEEIVRIKADERKALFLVKEVTKYFHGDAAKEEAHPFRIFMIVRDFLNILDQVCKEVGRMQDRTVIGSARSFRIAASASLPVLNRYHARQDRSSDEESLSP 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1790 868 PANTHER FORMIN-RELATED 11 868 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Ssu6g1790 868 MobiDBLite consensus disorder prediction 228 253 - -
Ssu6g1790 868 MobiDBLite consensus disorder prediction 48 113 - -
Ssu6g1790 868 ProSiteProfiles Formin homology-2 (FH2) domain profile. 419 843 IPR015425 -
Ssu6g1790 868 Gene3D Formin, FH2 domain 422 829 IPR042201 -
Ssu6g1790 868 MobiDBLite consensus disorder prediction 156 261 - -
Ssu6g1790 868 MobiDBLite consensus disorder prediction 180 199 - -
Ssu6g1790 868 MobiDBLite consensus disorder prediction 49 91 - -
Ssu6g1790 868 SUPERFAMILY Formin homology 2 domain (FH2 domain) 357 829 - -
Ssu6g1790 868 MobiDBLite consensus disorder prediction 354 370 - -
Ssu6g1790 868 PANTHER FORMIN-LIKE PROTEIN 11 868 - -
Ssu6g1790 868 MobiDBLite consensus disorder prediction 92 109 - -
Ssu6g1790 868 MobiDBLite consensus disorder prediction 281 421 - -
Ssu6g1790 868 MobiDBLite consensus disorder prediction 212 226 - -
Ssu6g1790 868 Pfam Formin Homology 2 Domain 425 817 IPR015425 -
Ssu6g1790 868 SMART it6_source 419 832 IPR015425 -
Ssu6g1790 868 MobiDBLite consensus disorder prediction 372 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1790 Ssu-Chr6 30541802 30545925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1790 409 858 FH2 protein (formin) Gene Family AT5G67470 72.627 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1790 - - gmx:100803578 1331.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2570 2 85007124 85012600 Ssu6g1790 6 30541802 30545925 PCT