Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1789 ATGGAGAGTTATTTGCATGAGAATTTCGGAGGAGTCAAGTCCAAAAACTCTACCGAAGAGGCTCTTCAAAAATGGAGGAAGGTATGCGGGGTGGTAAAGAACCCCAAACGACGCTTTCGTTTCACTGCCAACATCTCCAAGCGCTACGAAGCAGCCGCTATGCGTCGTACCAATCAGGAGAAGCTAAGGGTTGCTGTTTTGGTTTCCAAAGCCGCATTTCAATTTATCCAAGGCAACGATTACGTTGTGCCTGATGAAGTTAAAGCCGCGGGTTTCCAAATCTGTGCTGATGAATTGGGGTCTATTGTTGAAGGCCACGATGTGAAGAAGCTCAAGTTTCATGGTGGAGTAAGTGGCATTGCAGAAAAGCTTTCAACATCAACCACTAAGGGCCTTGGTAGTGATTCTGAATCACGGCACAGGAGACAAGAGATTTTTGGAATCAATAAATTCACTGAAAGTGAAGTTAGGAGTTTCtgggtttttgtttttgaagcCCTTCAAGACATGACTCTCATGATCCTTGGAGTGTGTGCTTTTGTGTCTCTGATAGTTGGCATAGCAACTGAAGGATGGCCCAAAGGTGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTTCTGGTTGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCATTGCAATTCAAGGACTTAGacaaggagaagaaaaagatttcCGTTCAGGTCACAAGAAACGGTTACAGGCAGAAAATGTCAATATATAGTTTACTTCCTGGTGACATTGTGCATCTTGCTATTGGAGACCAAGTCCCTGCAGATGGCTTATTCGTTTCAGGATTTTCTGTGCTGATTGATGAGTCTAGTTTAACTGGTGAGAGTGAGCCAGTGATGGTGACTTCCCAAAATCCTTTTCTTCTCTCGGGAACCAAGGTCCAAGATGGATCTTGCACCATGTTGGTTACCACAGTTGGGATGAGGACTCAATGGGGCAAGTTGATGGCAACTCTGAGTGAAGGTGGAGATGATGAAACCCCTTTGCAGGTGAAACTGAACGGAGTAGCAACCATTATTGGGAAGATAGGACTCTTCTTTGCGGTGGTTACCTTTGCAGTTTTGGTGAAAGGACTCATGAGCCGCAAACTCCAAGAAGGAAGATTCTGGTGGTGGTCAGCAGATGATGCAATGGAGATGTTGGAATTCTTTGCCATTGCAGTtaccattgttgttgttgctgttccAGAGGGGCTACCATTAGCTGTGACATTGAGCCTTGCCTTTGcaatgaagaagatgatgaatgaCAAGGCCCTGGTGAGGCATTTGGCAGCTTGTGAAACTATGGGATCAGCCACAACTATATGTAGTGACAAGACTGGGACACTAACAACCAACCGCATGACTGTGGTGAAAACATGCATTTGTATGAATAGCAAGGAAGTGACCACTAATGATTCTAGTTTGTCCTCTGAACTCCCAGATTCTGCTTTGAAACTATTGCTTCAGTCAATATTTAATAACACTGGAGGAGAGGTTGTGGTTAACAAAAAAGGTAAACGCGAGATCTTGGGAACGCCAACAGAGACAGCACTATTGGAGTTTGGCTTATCACTAGGTGGGGATTTTCAGGCAGAGAGACAAGCATGTAAAGTTGTTAAAGTTGAGCCATTCAACTCTGAGAAGAAAAGAATGGGTGTAGTTTTGGAGCTCCCTGAAGGAGGTTTAAGGGCTCATTGTAAAGGTGCTTCTGAAATCATTCTGGCTGCTTGTGACAAGGTGATAAACTCAAACGGTGATGTTGTCTCTATTGATGAAGAATCAAGTAATTTTCTCAAGAGTACAATCAACCAGTTTGCTGGTGAGGCACTCAGAACTCTTTGCCTTGCATATATGGAATTGGAAAGCGGGTTTTCTGCTGAAGACCCTATTCCTGTTTCTGGCTACATATGCATAGGAGTTGTAGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAATCAGTTGAAGTGTGTCGTTCAGCTGGAATAATGGTGAGAATGGTTACAGGAGACAATATTAATACTGCAAAGGCCATAGCCAGGGAATGTGGGATTTTAACAGATGATGGCATAGCCATTGAGGGTCCAGACTTTAGAGAAAAGACTCAGGAGGAGTTGTTTGAACTGATTCCAAAAATTCAGgttATGGCTCGATCCTCACCTCTAGACAAACATACACTGGTGAAACACCTGCGTACCACATTCGGGGAAGTTGTAGCTGTAACTGGAGATGGAACAAATGATGCCCCGGCTCTTCATGAAGCTGATATCGGACTTGCAATGGGAATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATAATTCTGGATGATAATTTTTCTACAATAGTGACAGTGGCCAAATGGGGACGTTCAGTTtacataaatattcaaaaattcgTACAGTTCCAGCTCACCGTAAATGTGGTTGCATTACTAGTGAACTTCTCGTCAGCATGCCTGACAGGCAGTGCACCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACGCTGGGAGCACTTGCACTTGCAACTGAACCTCCAACTGATGATCTAATGAAGCGTGCACCAGTGGGGAGGAAGGGGGACTTCATCAACAACGTCATGTGGAGGAATATCTTAGGACAAGCATTGTATCAGTTTGTGGTGATATGGTTTCTTCAATCAGTAGGAAAATGGGTCTTTTTTCTCAGGGGCCCGAATGTTGAAGTGGTCTTAAACACACTTATTTTCAAcacatttgtattttgtcaGGTTTTCAATGAGATAAACTCTCGTGAAATGGAGGAGATAGATGTTTTCAAAGGCATATGGGATAATCATGTGTTCATAGCTGTTATCAGTTgcactgttttctctcaaatcGTAATAGTTGAGTACTTGGGAACCTTTGCCAACACAACGCCTCTCAGTCTGGTACAGTGGATCTTTTGCTTAGCGGTTGGATATATGGGCATGCCACTTGCAATTCGCTTAAAGCAGATCCCCGTCTGA 3036 0.4196 MESYLHENFGGVKSKNSTEEALQKWRKVCGVVKNPKRRFRFTANISKRYEAAAMRRTNQEKLRVAVLVSKAAFQFIQGNDYVVPDEVKAAGFQICADELGSIVEGHDVKKLKFHGGVSGIAEKLSTSTTKGLGSDSESRHRRQEIFGINKFTESEVRSFWVFVFEALQDMTLMILGVCAFVSLIVGIATEGWPKGAHDGLGIVASIFLVVFVTATSDYRQSLQFKDLDKEKKKISVQVTRNGYRQKMSIYSLLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVKGLMSRKLQEGRFWWWSADDAMEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVTTNDSSLSSELPDSALKLLLQSIFNNTGGEVVVNKKGKREILGTPTETALLEFGLSLGGDFQAERQACKVVKVEPFNSEKKRMGVVLELPEGGLRAHCKGASEIILAACDKVINSNGDVVSIDEESSNFLKSTINQFAGEALRTLCLAYMELESGFSAEDPIPVSGYICIGVVGIKDPVRPGVKESVEVCRSAGIMVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEELFELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRAPVGRKGDFINNVMWRNILGQALYQFVVIWFLQSVGKWVFFLRGPNVEVVLNTLIFNTFVFCQVFNEINSREMEEIDVFKGIWDNHVFIAVISCTVFSQIVIVEYLGTFANTTPLSLVQWIFCLAVGYMGMPLAIRLKQIPV 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1789 1011 PRINTS H+-transporting ATPase (proton pump) signature 782 807 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu6g1789 1011 PRINTS H+-transporting ATPase (proton pump) signature 750 766 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu6g1789 1011 PRINTS H+-transporting ATPase (proton pump) signature 606 624 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu6g1789 1011 SUPERFAMILY HAD-like 448 855 IPR036412 -
Ssu6g1789 1011 SUPERFAMILY Calcium ATPase, transmembrane domain M 114 1010 IPR023298 -
Ssu6g1789 1011 SFLD Haloacid Dehalogenase 432 802 - -
Ssu6g1789 1011 PANTHER CATION TRANSPORTING ATPASE 2 1010 - -
Ssu6g1789 1011 Gene3D - 460 654 IPR023299 GO:0000166
Ssu6g1789 1011 Pfam Cation transporter/ATPase, N-terminus 114 182 IPR004014 -
Ssu6g1789 1011 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 659 IPR023299 GO:0000166
Ssu6g1789 1011 SMART Cation_ATPase_N_a_2 113 187 IPR004014 -
Ssu6g1789 1011 CDD P-type_ATPase_Ca_PMCA-like 141 883 - -
Ssu6g1789 1011 Gene3D - 135 333 - -
Ssu6g1789 1011 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Ssu6g1789 1011 PRINTS P-type cation-transporting ATPase superfamily signature 647 658 - -
Ssu6g1789 1011 PRINTS P-type cation-transporting ATPase superfamily signature 774 786 - -
Ssu6g1789 1011 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Ssu6g1789 1011 PRINTS P-type cation-transporting ATPase superfamily signature 669 679 - -
Ssu6g1789 1011 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Ssu6g1789 1011 SUPERFAMILY Calcium ATPase, transduction domain A 235 330 IPR008250 -
Ssu6g1789 1011 Gene3D - 447 795 IPR023214 -
Ssu6g1789 1011 PANTHER CALCIUM-TRANSPORTING ATPASE 2 1010 - -
Ssu6g1789 1011 Pfam Cation transporting ATPase, C-terminus 835 1003 IPR006068 -
Ssu6g1789 1011 Gene3D - 17 77 - -
Ssu6g1789 1011 Gene3D - 165 997 - -
Ssu6g1789 1011 Pfam E1-E2 ATPase 233 428 - -
Ssu6g1789 1011 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Ssu6g1789 1011 SFLD p-type atpase 432 802 IPR044492 -
Ssu6g1789 1011 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 108 1011 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Ssu6g1789 1011 Pfam Cation transport ATPase (P-type) 510 588 - -
Ssu6g1789 1011 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Ssu6g1789 1011 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 383 475 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu6g1789 1011 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 542 695 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu6g1789 1011 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 721 833 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1789 Ssu-Chr6 30530530 30535061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1789 1 1011 Primary Pumps ATPases AT4G37640 81.773 0.0 1703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1789 K01537 - gmx:100776926 1879.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2573 2 85043978 85049142 Ssu6g1789 6 30530530 30535061 PCT