Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1788 ATGACTGAGGTGCAGGTAATGAGGGGCACCTACAAGGGTCAAGAGGGCGAGGTCACGCAAGTGTATCGCCATAAGTGGGTTATCCACATTGCGTGCATTACACATGATAGGGTTAACGACTCCATAGTTAACGCTAGCATTCACCCTTCCGACATCCTCTTCACCAAGCTCACCCTCAATAATGACTGCAGGTCCTTGCTCAATCATGAGGCCAAAGATTACGTCACCATCGACAAGGAAAAAGCCACCAAGTTTGTGCCCCAAGACAttatatacaatgttaattaG 288 0.4618 MTEVQVMRGTYKGQEGEVTQVYRHKWVIHIACITHDRVNDSIVNASIHPSDILFTKLTLNNDCRSLLNHEAKDYVTIDKEKATKFVPQDIIYNVN 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1788 95 PANTHER 60S RIBOSOMAL PROTEIN L26-1-LIKE 3 94 - -
Ssu6g1788 95 TIGRFAM rplX_A_E: ribosomal protein uL24 3 65 IPR005756 GO:0003735|GO:0006412|GO:0015934
Ssu6g1788 95 CDD KOW_RPL26 3 52 IPR041988 GO:0003723
Ssu6g1788 95 SUPERFAMILY Translation proteins SH3-like domain 3 69 IPR008991 -
Ssu6g1788 95 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 3 94 IPR005756 GO:0003735|GO:0006412|GO:0015934
Ssu6g1788 95 Pfam KOW motif 3 30 IPR005824 -
Ssu6g1788 95 Gene3D - 2 88 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1788 Ssu-Chr6 30522406 30522693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1788 3 95 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 54.839 1.01e-34 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1788 K02898 - sind:105172377 117.087