Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1783 ATGGATACCTTGTTTAGGCTAGTAAGCTTTCatcaacaacagcaacaacaacaacccgATCCATCCCTCAACTCCACCACCAGCAGAACCTCCAGCAGCTCCAGATCCTCCCGCCAAAACTACTACCACTACTCCCAGCAAGAAGACGAAGAATGCTTCAACTTTTACATGGATGAAGAAGACCTATCCTCGTCTTCTTCCAAACACTACTACCCCTACCAACCCCACGTATCCAccacccccaccaccaccaccaccttcagCAACACCGATTACTCCCACTCCTTCTCCCCCACCCCACCCGTTCCCGACTTCAACTTCGAATTCTCCCCCAACTGGTCCCACAACCTCCTCCTCGAAGCCGCACGCGCCGTCGCAGACGCCAACAGCACGCGCCTCCACCACCTCCTCTGGATGCTCAACGAACTCAGCTCCCCCTACGGCGACACCGACCAAAAACTCGCCGCGTATTTCCTCCAAGCCCTCTTCAGCCGCGTCACCGACGCGGGAGACCGAACCTACCGAACCTTAGCCTCGGCCTCCGAGAAGACATGCTCCTTCGAGTCAACGAGAAAAACGGTGCTCAAGTTCCAGGAGGTCAGCCCCTGGACAACCTTCGGACACGTGGCGTCCAACGGCGCCATCTTGGAAGCCTTGGAGGGAAACCCCAAGTTGCACATCCTCGACATCAGCAACACCTATTGCACCCAGTGGCCGACCCTTCTAGAAGCCCTGGCCACCCGAACCGACGAGACCCCGCACCTTAGGCTAACCACCGTGGTCACCGGAAGAACCGGCAACTCCGTCCAGCGCGTCATGAGGGAAATCGGGACGCGGATGGAGAAATTCGCGCGACTCATGGGCGTTCCGTTCAGGTTCAACGTCGTTCACCACGCCGGCGATCTCTCCGGGCTGAATTTCTCCGAGCTCGACATCAAGGACGACGAGGCCCTGGCCGTCAACTGCGTGAACGCCCTGCATTCGGTTCCCGCGTCGGGGAACAACCGCGACGCGTTAATATCGTCGCTGCAAGGGCTGCAGCCGAGGATTGTGAcggtggtggaggaggaggcTGATCTGGACGTTGGAACCGAGGGTTACGAGTTCGTGAGAGGGTTCGAGGAGTGTCTGAGGTGGTTTAGGGTTTACTTCGAGGCTTTGGATGAGAGTTTCGCGCGGACGAGTGACGAGAGGTTGATGCTGGAGCGCGCCGCGGGGAGGGCGGTCGTGGACCTGGTGGCGTGTTCGCCCGCGGAGTCGGTGGAGCGGCGGGAGACGGCGGCGCGGTGGGCGACGCGGCTGCATGGGGGAGGGTTAAGCGCGGTGCCGTTTAGCGAGGAGGTGTGCGATGATGTGAGGGCGCTGTTGAGGAGGTACAAGGAGGGGTGGTCGATGGCGCAGTGCTCTGACGCCGGAATATTCCTGTCGTGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCATGGAGGCCTTAA 1473 0.5689 MDTLFRLVSFHQQQQQQQPDPSLNSTTSRTSSSSRSSRQNYYHYSQQEDEECFNFYMDEEDLSSSSSKHYYPYQPHVSTTPTTTTTFSNTDYSHSFSPTPPVPDFNFEFSPNWSHNLLLEAARAVADANSTRLHHLLWMLNELSSPYGDTDQKLAAYFLQALFSRVTDAGDRTYRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGNPKLHILDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTGRTGNSVQRVMREIGTRMEKFARLMGVPFRFNVVHHAGDLSGLNFSELDIKDDEALAVNCVNALHSVPASGNNRDALISSLQGLQPRIVTVVEEEADLDVGTEGYEFVRGFEECLRWFRVYFEALDESFARTSDERLMLERAAGRAVVDLVACSPAESVERRETAARWATRLHGGGLSAVPFSEEVCDDVRALLRRYKEGWSMAQCSDAGIFLSWKDQPVVWASAWRP 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1783 490 ProSiteProfiles GRAS family profile. 105 489 IPR005202 -
Ssu6g1783 490 PANTHER PROTEIN SHORT-ROOT 1 489 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Ssu6g1783 490 MobiDBLite consensus disorder prediction 8 41 - -
Ssu6g1783 490 Pfam GRAS domain family 116 489 IPR005202 -
Ssu6g1783 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 489 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1783 Ssu-Chr6 30433275 30434747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1783 1 490 GRAS Transcription Factor Family AT4G37650 58.736 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu6g1783 GRAS 9.6e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1783 - - gmx:100778524 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2581 2 85141727 85143139 Ssu6g1783 6 30433275 30434747 PCT