Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1778 ATGTTATCGTCCTTTTGCTTTGATCAAATTTGCAAATTAATGGCATACCTTTGCTGTACTAGTTTATATGCTTTGAACTGTGAACAGGATAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCCGGCAAAAGGCAAAGCTTGCTCTTAAAAGGAGCCTACCAGCCCCCAAAATTGACAATAATCATATGGCCTTGAGTACCGTAGTTCGACATGATGAAGTTCTCGATACTAAGCCCTTAGCAGTTTCTGGTGGACCAATGCAATCTCCTAATTCAAAAGAACAAATATCAAGGTTGGTGGATAATCATATATTAGAGGCCATTGTCAACATGAAGGAGCAAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTACATAGAGGACAAATATCGGTCTCCACCAAATCTCAATAAATTACTGTCAACCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCATAAGTTCAGGATTGTGCCAAGTTCAACAGTCTCCGAGAAAAGAAGATTCTCTTCAGTGATACTTTTGGAAGGGAGGCCTAAAGATCCTTCAGAAGCACACAAGAATGATGATGTCAACATCCTTTCAAAATCCCAAATTGATGCAGAGATATCAAAAGTGAAGGGTATGACAGCTCAAGAGGCAGCTGCTGCGGCTGCAAAAGCGGTTGCAGAGGCAGAAGCTGCCATTGCACAGGCTGAGGTAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGGTAG 828 0.4239 MLSSFCFDQICKLMAYLCCTSLYALNCEQDKWRNINVTAIWGSRQKAKLALKRSLPAPKIDNNHMALSTVVRHDEVLDTKPLAVSGGPMQSPNSKEQISRLVDNHILEAIVNMKEQKGSDKAAIASYIEDKYRSPPNLNKLLSTKLKHMVASGKIIKEKHKFRIVPSSTVSEKRRFSSVILLEGRPKDPSEAHKNDDVNILSKSQIDAEISKVKGMTAQEAAAAAAKAVAEAEAAIAQAEVAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHIW 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1778 275 SUPERFAMILY "Winged helix" DNA-binding domain 103 175 IPR036390 -
Ssu6g1778 275 Pfam linker histone H1 and H5 family 106 159 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu6g1778 275 Gene3D - 95 175 IPR036388 -
Ssu6g1778 275 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 97 166 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu6g1778 275 Coils Coil 222 256 - -
Ssu6g1778 275 CDD H15 106 175 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu6g1778 275 PANTHER SINGLE MYB HISTONE 4 29 274 IPR044597 GO:0003691
Ssu6g1778 275 PANTHER MYB TRANSCRIPTION FACTOR 29 274 - -
Ssu6g1778 275 SMART h15plus2 83 161 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1778 Ssu-Chr6 30400626 30403460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1778 29 275 Single Myb Histone (SMH) Gene Family AT5G67580 49.206 1.56e-45 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1778 K09422 - gmx:100779583 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2585 2 85189022 85192794 Ssu6g1778 6 30400626 30403460 PCT