Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1772 ATGTCTATCGACTCCTCAAACCACCCAACTGTTGACTTGTACTGCAGTGAAGTAACTAGCGATGTGTTTCAGTTGGATTCCGATGAGGCTAATTTGAAGTTGAGTGATCTATGGGGAGACACCGATAGCGATGAAAGCTGTCTATTGAGCTTATTAGAATCCGAACATGATCAAGTACAGGAACAAACAAAGTCACTAGGACAACTTCGCAAAAAAACATGGCTGATTAATGCTCGAGAAGAGGCCATAAGTTGGATCCTAAAGGTGCATGCTTACTACTGTTTTAGACCCGAGACAGCATATCTTTCTGTAAATTACCTCGATCGTTTCCTTTTGTCACACACCTTGACGCAAGATAAAGCATGGCCTCTGCAGCTGTTATCAGTTGCTTGTCTTGCACTGGCAGCAAAAATGGAAGAAACCAAAGTGCCACTTCTTCTGGACCTACAAGTGATCGATTCAAAGTTTCTGTTTAAGCCCAAAACAGTTCAGAGAATGGAGCTTTTGGTTATGGCAAGTCTCAAGTGGCGATTGCGCACTATAACCCCTTTTGATTTTGTCTACCTTTTCATTGCCAAGCATTCATGCTCTGCTTCCACATGGGGAGATTTGAGTTACATGGTTTCTCGTGTCTCAGATGTTATTATCAGAACATGTCTAGTCATAGATTTCTTGGAGTTTTCACCGTCCACAATAGCAGCAGCCGCACTGTTATGGGTAACCAATCAATGTCTCGatgaaaagaaatcaaattgcTTCCACAAGAATATAAGCATTGAGATGGTGCAGAAATGTTACAAACTAATGATGCAGAAACAGATTATTCGCCGATCAGAATTTTTTTGGCCAAAGACTTTACAATTATTGCCCCGAAGTCCCACCTGCGTGCTTGATCATGCAGCTATGCAAGAAAGCAGCGATGCTCACAAGCCCTGA 936 0.4167 MSIDSSNHPTVDLYCSEVTSDVFQLDSDEANLKLSDLWGDTDSDESCLLSLLESEHDQVQEQTKSLGQLRKKTWLINAREEAISWILKVHAYYCFRPETAYLSVNYLDRFLLSHTLTQDKAWPLQLLSVACLALAAKMEETKVPLLLDLQVIDSKFLFKPKTVQRMELLVMASLKWRLRTITPFDFVYLFIAKHSCSASTWGDLSYMVSRVSDVIIRTCLVIDFLEFSPSTIAAAALLWVTNQCLDEKKSNCFHKNISIEMVQKCYKLMMQKQIIRRSEFFWPKTLQLLPRSPTCVLDHAAMQESSDAHKP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1772 311 PANTHER CYCLIN-D1-1-LIKE ISOFORM X1 1 303 - -
Ssu6g1772 311 SUPERFAMILY Cyclin-like 38 178 IPR036915 -
Ssu6g1772 311 Pfam Cyclin, C-terminal domain 181 273 IPR004367 -
Ssu6g1772 311 PANTHER CYCLINS 1 303 IPR039361 -
Ssu6g1772 311 CDD CYCLIN 79 171 IPR013763 -
Ssu6g1772 311 SUPERFAMILY Cyclin-like 163 278 IPR036915 -
Ssu6g1772 311 SMART cyclin_7 84 172 IPR013763 -
Ssu6g1772 311 Gene3D - 50 266 - -
Ssu6g1772 311 Pfam Cyclin, N-terminal domain 52 178 IPR006671 -
Ssu6g1772 311 ProSitePatterns Cyclins signature. 79 110 IPR006671 -
Ssu6g1772 311 SMART Cyclin_C_2 181 306 IPR004367 -
Ssu6g1772 311 Gene3D - 61 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1772 Ssu-Chr6 30258832 30260129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1772 1 274 Core Cell Cycle Gene Families AT1G70210 40.909 2.15e-59 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1772 K18810 - gmx:100799323 509.99