Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1769 ATGCCAATGTTTCAGCTTCATTGTAAGGGGGATGGGGTGGAGGGCCAGATTCTAGATCTGGACACTGCGGTGAAAGATGGGGTTTTGGGTGGCGTGGATTCTGGGGTTGTGGGAACTGGGGTTGGTGAAAAGTTGGATCTTGGGAGAATGATCGAAGAGTTGGACTTGTGTGAGGTTCCCTCTGTGTTCATTTGCCCAATTTCCCTCGACCCAATGCAGGACCCTGTGACCCTTTGCACGGGCCAGACCTATGAGAGGTCCAACGTTCTCAAGTGGTTCAGTCTGGGGCACTTGACGTGCCCCACCACAATGCAAGAGCTCTGGGATGAGTCCCTCACTCCAAACACCACCCTCTACCGTTTGATATTCACTTGGTTTTCTCAGAAGTACCTTGTGATGAAGAAGAGATCAGAAGACGTGCAGGGGAGGGTGTTAGAGCTTGCTGAGACTCTGAAGAAGGTGAAGGGTCAGGCTCGTGTTCTGGCCCTCAAGGAGCTCCATCAAGTGGTGGCTGCTCATGCCACTGCCCGCAAGGCATTGGTTGATGGCGGTGGAGTCTCCGTGGTGTTGTCGTTGCTCGGTCCTTTCACTTCCCATGCCGTCGGCTCCGAGGTCATTGGTGTTCTTGTGAGTTTGAGCCTTGATTGTGAGTCCAAGAGGAACCTGGTGCAGCCCGCAAAGGTTTCATTGATGGTGGACATTTTGAATGAGGGTTCAGTTGAGACAAAGATCAATTGCACGCGGCTGATTGAGACACTGATTGAAGGGAAGGATTTGCAATTGGAGGTTTTCAGGAGCCATGGCCTTTTGGTTGGGTTGATGAGGCTTGTGAAGGACAAGAGGCACACGAATGGAATCCGCCCTGGACTGAGGCTCCTCAGAACAGTGTGCTTGCATGCAGAAGTCAATAGTTTGCTGGTGAGCATTGGGGCTGTTTCTCAATTGGTTGAGTTGTTGTCTGGTTTGGAGCCTGATTGTTTGGAATTGGCTCTTTCAATTTTGGATGCATTGGCGTCTGTCCCTGAAGGAAGATTAGCTTTGAAGGATTGTTCTAATACAATACCCGGTATGGTGAAACTGTTGACGAGGGTCTCAGAGAACTGCACCCAATATGCATTGTCAATACTGCGGTGTGTGTGCAAGCTTTCACCTGAGGAGTGCTCTTTGATTGCTGTGGAAGCAGGACTTGCTGCGAAACTCCTCCTTGTGATTCAAAGTGGTTGCAATCCTGTATTGAAACAACAGTCGGCTGAGCTTTTGAAGTTGTGTAGTCTGAATTGTTCAGATACAGTCTTCATTTCCAAGTGCAAGCTTACTAGAACCATCCAATGA 1332 0.4962 MPMFQLHCKGDGVEGQILDLDTAVKDGVLGGVDSGVVGTGVGEKLDLGRMIEELDLCEVPSVFICPISLDPMQDPVTLCTGQTYERSNVLKWFSLGHLTCPTTMQELWDESLTPNTTLYRLIFTWFSQKYLVMKKRSEDVQGRVLELAETLKKVKGQARVLALKELHQVVAAHATARKALVDGGGVSVVLSLLGPFTSHAVGSEVIGVLVSLSLDCESKRNLVQPAKVSLMVDILNEGSVETKINCTRLIETLIEGKDLQLEVFRSHGLLVGLMRLVKDKRHTNGIRPGLRLLRTVCLHAEVNSLLVSIGAVSQLVELLSGLEPDCLELALSILDALASVPEGRLALKDCSNTIPGMVKLLTRVSENCTQYALSILRCVCKLSPEECSLIAVEAGLAAKLLLVIQSGCNPVLKQQSAELLKLCSLNCSDTVFISKCKLTRTIQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1769 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 132 IPR013083 -
Ssu6g1769 443 ProSiteProfiles U-box domain profile. 58 132 IPR003613 GO:0004842|GO:0016567
Ssu6g1769 443 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 32 442 - -
Ssu6g1769 443 SMART Ubox_2 62 125 IPR003613 GO:0004842|GO:0016567
Ssu6g1769 443 PANTHER WDSAM1 PROTEIN 32 442 IPR045185 GO:0061630
Ssu6g1769 443 Gene3D - 133 440 IPR011989 -
Ssu6g1769 443 CDD RING-Ubox_PUB 63 105 IPR045210 -
Ssu6g1769 443 SUPERFAMILY ARM repeat 156 258 IPR016024 -
Ssu6g1769 443 Pfam U-box domain 59 129 IPR003613 GO:0004842|GO:0016567
Ssu6g1769 443 SUPERFAMILY RING/U-box 53 129 - -
Ssu6g1769 443 SUPERFAMILY ARM repeat 229 430 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1769 Ssu-Chr6 30201285 30202616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1769 1 443 U-box Gene Family AT3G49810 69.778 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1769 - - gmx:100781741 732.25