Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1765 ATGCTCACCGCTCTCCCTCCCTCCGACTCCCTTCTCGGAAACCCATTCTCCGCCTTCGCCGGCGGCTTCACGCCCTGGGAGGATGACTCCCACGACCTCTTCTCCCCCAAACCCGTCACTTCCAGCTCCGGTTCCGACCAACCCAACCGAAACCCCGAACCGGACCCCGCTGCCTCGGTCATGGACGAGCGAAAACGGCGCCGCATGATGTCGAACCGGGAATCGGCCCGCAGGTCGCGGATGCGTAAACAGAGACACCTCGAGAACCTTCGGAACCAGTTGAACAAGTGTAGGGTCGAAAACCAGGAACTGAACAACCGGTTGCAGTTCATCCTGCACCACTGTAACCGCGTCCGAACCGAAAACGAATGGCTCCGCTCCCAGCGAACCCTGCTCTGCCAAAAAGTCTCCAACTtaactcaaattttgattttccaaCAATTCCAACCCTCATGGACATGCAATACTTCGCTCATGACTGCATAA 486 0.5576 MLTALPPSDSLLGNPFSAFAGGFTPWEDDSHDLFSPKPVTSSSGSDQPNRNPEPDPAASVMDERKRRRMMSNRESARRSRMRKQRHLENLRNQLNKCRVENQELNNRLQFILHHCNRVRTENEWLRSQRTLLCQKVSNLTQILIFQQFQPSWTCNTSLMTA 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1765 161 PANTHER BZIP TRANSCRIPTION FACTOR 30 156 - -
Ssu6g1765 161 CDD bZIP_plant_GBF1 65 116 IPR045314 GO:0003700|GO:0006355
Ssu6g1765 161 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 62 125 IPR004827 GO:0003700|GO:0006355
Ssu6g1765 161 Pfam bZIP transcription factor 64 122 IPR004827 GO:0003700|GO:0006355
Ssu6g1765 161 SMART brlzneu 60 124 IPR004827 GO:0003700|GO:0006355
Ssu6g1765 161 SUPERFAMILY Leucine zipper domain 64 114 IPR046347 GO:0003700|GO:0006355
Ssu6g1765 161 Gene3D - 62 143 - -
Ssu6g1765 161 MobiDBLite consensus disorder prediction 27 83 - -
Ssu6g1765 161 MobiDBLite consensus disorder prediction 57 77 - -
Ssu6g1765 161 Coils Coil 73 107 - -
Ssu6g1765 161 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 67 82 IPR004827 GO:0003700|GO:0006355
Ssu6g1765 161 PANTHER BZIP TRANSCRIPTION FACTOR 44 30 156 - -
Ssu6g1765 161 MobiDBLite consensus disorder prediction 35 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1765 Ssu-Chr6 30089196 30089681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1765 1 147 bZIP Transcription Factor Family AT3G49760 39.490 1.66e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu6g1765 bZIP_1 1.4e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1765 - - gmx:100809244 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2599 2 85391495 85392022 Ssu6g1765 6 30089196 30089681 PCT