Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1759 atgaagagcaTGGAAAATGATGACACCGTTGAcgttaataatcaaaataactgGTTGGGTTTCTCACTCTCTCCTCAAATGAATAACATAGGCGTTCCTTCACACCCCCATCACTCCCAGCCTTCCTCTGCTGCTGCTGAAGTGGTTCCTACAAGCTTTTACCACCATGCTCCTCTTAATAACTATGGCTTCTACTATGGACTTGAAGCAGAAAATGTTGGATTGTATTCAGCCCTGCCTATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGAATGGAAGCTTTGACCAGGTCACAAGCACAAGCAATGGCTGCTGCTTCAAGTCCAAAACTGGAGAATTTCTTAGGTGGGGAAGCGATGGGGACCCCTCACTATGAATGCAGTGCCACAGAAACAATGCCTCTGAGCTTAGACACTGTGTTTTACAACCAACCCTCGCGCCGTGACCCAAACAACCCAACATACCAAAACCATGTCCAACACATTAGCacccaacaacaacagcaaGAGCTTCACACCCAACACTTGTCATATTACTCTACCTTGAGAAACCATGATATGATGTTAGAAGGGTCCAAGCAAAATCAAACTTCAGATAACAATATTCAGGTTTCAAACATGGGTGATGATGGAGTTCCTGTTGGTCTTAAGAGTTGGGCAGTAAGGAACTTCCAAGGTAGCCATGCACAGGAGTCAAAGATGATTGTTCCTGTGGAGGAAAATGGAGGTGAATCAGGGTCCATTGGATCAATGGCTTATGGGGATTTGCAGTCTTTAAGCTTGTCCATGAGTCCTAGCTCACAGTCTAGCTGTGTTACAAGTTCACACCGTACATCGCCTGCTGTCATTGATTCTGTTGCCATGGATACAAAGAAAAGGGGACCTGAAAAGGTTGACCAGAAGCAAATTGTTCATAGGAAGTCCATTGACACCTTTGGACAAAGAACCTCCCAGTATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAAGCAGGAAAGGAAGACAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTCCCtTtggaaaattatcaaaatgaactTGAGGAAATGAAGAACATGACCAGACAAGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTTTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACCCAGGAGGAAGCAGCTGAAGCCTACGACATTGCTGCTATAAAATTCCGAGGAGTGAATGCTGTGACCAACTTTGACATAACAAAATATGATGTGGAGAAAATCATGGCAAGCAGCAACCTTCTTAGCAGTGAGCTAGCTAGGCGCAACAGAGAGACAGATAGTGGAACTCAGTATATTGATCATAATCATAAGCCTTCTGCATATGATAACACTCAAGAAGCTATACTGATGCAGAAGAGCTGTGAAAATCAAAATGATCAGTGGAAAATGGTTCTCTATCAATCCTCTCAACAACTTGACCAGAATCCACCAAGAATTGAGAGTGACAGAGCTAACCAGTCCGTCTCAGTGGCTTTGGACAACATGTTTCATCAAGAAGTAGAGGAATCAAGTAAGGTGAGAACGCATGTGTCAAATCCTTCTTCATTGGCCACAAGTTTGAGTAGCTCAAGAGAAGGTAGCCCAGATAGGACAAGCTTGCCAATGCTCTCTGGAATGCCTTCAACTGCGTCCAAACTATTGGCTACTAATAGTAACCTCAACATGAATTCTTGGGAACCTTCACCACATTTGAGGCCTGCCCTTTCTTTGCCTCAGATGCCAGTGTTTGCTGCTTGGACAGATGCATAG 1992 0.4302 MKSMENDDTVDVNNQNNWLGFSLSPQMNNIGVPSHPHHSQPSSAAAEVVPTSFYHHAPLNNYGFYYGLEAENVGLYSALPIMPLKSDGSLYGMEALTRSQAQAMAAASSPKLENFLGGEAMGTPHYECSATETMPLSLDTVFYNQPSRRDPNNPTYQNHVQHISTQQQQQELHTQHLSYYSTLRNHDMMLEGSKQNQTSDNNIQVSNMGDDGVPVGLKSWAVRNFQGSHAQESKMIVPVEENGGESGSIGSMAYGDLQSLSLSMSPSSQSSCVTSSHRTSPAVIDSVAMDTKKRGPEKVDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITKYDVEKIMASSNLLSSELARRNRETDSGTQYIDHNHKPSAYDNTQEAILMQKSCENQNDQWKMVLYQSSQQLDQNPPRIESDRANQSVSVALDNMFHQEVEESSKVRTHVSNPSSLATSLSSSREGSPDRTSLPMLSGMPSTASKLLATNSNLNMNSWEPSPHLRPALSLPQMPVFAAWTDA 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1759 663 CDD AP2 318 385 IPR001471 GO:0003700|GO:0006355
Ssu6g1759 663 ProSiteProfiles AP2/ERF domain profile. 319 385 IPR001471 GO:0003700|GO:0006355
Ssu6g1759 663 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 661 - -
Ssu6g1759 663 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 661 - -
Ssu6g1759 663 Coils Coil 386 406 - -
Ssu6g1759 663 CDD AP2 420 481 IPR001471 GO:0003700|GO:0006355
Ssu6g1759 663 PRINTS Ethylene responsive element binding protein signature 320 331 IPR001471 GO:0003700|GO:0006355
Ssu6g1759 663 PRINTS Ethylene responsive element binding protein signature 461 481 IPR001471 GO:0003700|GO:0006355
Ssu6g1759 663 MobiDBLite consensus disorder prediction 588 621 - -
Ssu6g1759 663 ProSiteProfiles AP2/ERF domain profile. 421 479 IPR001471 GO:0003700|GO:0006355
Ssu6g1759 663 Gene3D AP2/ERF domain 318 387 IPR036955 GO:0003700|GO:0006355
Ssu6g1759 663 Gene3D AP2/ERF domain 421 481 IPR036955 GO:0003700|GO:0006355
Ssu6g1759 663 MobiDBLite consensus disorder prediction 582 621 - -
Ssu6g1759 663 SUPERFAMILY DNA-binding domain 318 387 IPR016177 GO:0003677
Ssu6g1759 663 MobiDBLite consensus disorder prediction 500 519 - -
Ssu6g1759 663 Pfam AP2 domain 422 471 IPR001471 GO:0003700|GO:0006355
Ssu6g1759 663 Pfam AP2 domain 319 377 IPR001471 GO:0003700|GO:0006355
Ssu6g1759 663 SUPERFAMILY DNA-binding domain 420 480 IPR016177 GO:0003677
Ssu6g1759 663 SMART rav1_2 319 391 IPR001471 GO:0003700|GO:0006355
Ssu6g1759 663 SMART rav1_2 421 485 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1759 Ssu-Chr6 29998311 30001884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1759 402 663 AP2-EREBP Transcription Factor Family AT4G37750 26.421 5.47e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ssu6g1759 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1759 K09285 - gmx:100787611 1070.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2601 2 85442000 85445256 Ssu6g1759 6 29998311 30001884 PCT