Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1756 ATGGTGAGGGCTCCTTGCTGTGACAAAGCCAACGTCAAGAGAGGTCCATGGTTGCCTGAAGAAGACGCCAAACTCAAATCTTATATTGAAGAGCACGGCACTGGTGGCAACTGGATAGCCCTGCCCCTGAAAATAGGCCTCAAAAGGTGTGGGAAAAGCTGTCGGCTCAGATGGCTGAACTATCTTCGCCCAAACATCAAACACGGGGGTTTCTCAGAAGAAGAAGACAACATAATTTGCAGCCTCTATGTTAAAATTGGAAGCAGGTGGTCTATTATAGCATCGCAATTACCAGGGCGCACGGATAATGATATAAAGAACTACTGGAACACTAAGCTAAAGAAGAAGCTACTAGGCAAGCAAAGGAAGGAGCAACAGGCTCAAGCTCGCCGAGTTTGCAGCCTAAAGCAAGAGATCAAgagaaaaactgaaaatttgATGTTACCTGCGGGAGTTATTACCCCAACACCCTATTGGCCCGAACAGCATTCCTTGCCCATTCCAGTGGCAAATGCTTCCATCCAATACTCCGATCTCAACAATCAAACATCATCCATCAAACACTTCCCTAACAACGTACTCACTGCCATCATGAATTCACAAAACTCATCATGTGACATTTCCCTAACACAAGACCAGCTATATCCCTCCACAATGAACATGATAACCACGGACACGTGTCACACATCAAACGTTTTTGAAGGGTTTGGGAACTTCCAGGGTGATTTGAGTGAGTGGGCCTGTGTGAACCCGCAACAAATAGATGGGTCAATGCGGGTTTTTTATGGATTGGAGTCCATGGACATGGCCAATGGTAGCACAAACACGACTTCAACCGAAAGCACTAGCTGGGGAGATATAAGCTCTTTGGTTTACTCGCCTTTGGTTTCTGACTACGAAGGTCACCAACAAAGAATGCCTCAAGATGTTACTTTCGAGGAGTCTAGTTACTGCGTGATGCAAACGCAATAA 972 0.4516 MVRAPCCDKANVKRGPWLPEEDAKLKSYIEEHGTGGNWIALPLKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVKIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKLLGKQRKEQQAQARRVCSLKQEIKRKTENLMLPAGVITPTPYWPEQHSLPIPVANASIQYSDLNNQTSSIKHFPNNVLTAIMNSQNSSCDISLTQDQLYPSTMNMITTDTCHTSNVFEGFGNFQGDLSEWACVNPQQIDGSMRVFYGLESMDMANGSTNTTSTESTSWGDISSLVYSPLVSDYEGHQQRMPQDVTFEESSYCVMQTQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1756 323 Gene3D - 70 145 - -
Ssu6g1756 323 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 195 307 - -
Ssu6g1756 323 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 221 - -
Ssu6g1756 323 Gene3D - 7 68 - -
Ssu6g1756 323 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Ssu6g1756 323 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ssu6g1756 323 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ssu6g1756 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ssu6g1756 323 CDD SANT 16 62 IPR001005 -
Ssu6g1756 323 CDD SANT 71 111 IPR001005 -
Ssu6g1756 323 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Ssu6g1756 323 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu6g1756 323 PANTHER OS09G0431300 PROTEIN 195 307 - -
Ssu6g1756 323 PANTHER OS09G0431300 PROTEIN 1 221 - -
Ssu6g1756 323 SMART sant 13 64 IPR001005 -
Ssu6g1756 323 SMART sant 67 115 IPR001005 -
Ssu6g1756 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1756 Ssu-Chr6 29907478 29909020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1756 1 293 MYB Transcription Factor Family AT3G49690 47.095 2.59e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu6g1756 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1756 K09422 - gmx:100792374 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2604 2 85591756 85593120 Ssu6g1756 6 29907478 29909020 PCT