Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1752 ATGATGGGTCTTGATCAGGATGCCAGCAACTCAGGCCTTCAGCTTATTCTAGGATTAGCTTTGACTGGCACCCCAACATCACCGTCCATTTCCAACAAGGTTGATCATGATGATGACCATCATCTTACTCTCAGGCCAAAGTCCTGTTCCTCTAAATCCAATTTCATCGCAACAAGCAACTCCGAGGCTGAGCCATCATTAACGTTGGGTCTGTCCCGTGAGAGTTACCGGCAGCAGGTGGTCAAAGTCCCCAAAAACATAGGACACAACAAAGTCTCCTCCTGTGAGGACCTTCTTGAACAGACTTCACCTCACAGTGCTATTTCCTCCTTCTCCAGTGGCAGGGTCAAGAGGGAGAGGGACCTTAGCTGTGAAGAAGTGGAGGCAACAGAGATAGAGAGGGTTTCTTCAAGAGCCAGCGACGAAGAAGAAGACGGCACCGCCGCCAGGAAGAAACTTAGGCTTACAAAAGAACAATCTGCTTTGCTAGAAGAAAGCTTCAAACAACATAGCACCCTCAATCCTAAACAGAAGCAAGCTTTGGCCAAGCAATTAAATCTACGGCCACGACAAGTTGAGGTGTGGTTTCAGAACCGGAGAGCaagAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTAAAGAAGTGTTGTGAAACATTGACAGATGAGAACAGGCGGTTACAGAAGGAGCTGCAAGAGCTTAAGGCACTGAAACTGGCTCAGCCCTTGTACATGCCTATGCCTGCGGCAACCCTCACCATGTGCCCCTCTTGTGAGAGGCTCGGTGGTGGCGTCAAAGGTGGCGCTTCCCCTAAGACCCCATTCTCCATAGCTCCTAAGCCTCACTTCTTCAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 891 0.4972 MMGLDQDASNSGLQLILGLALTGTPTSPSISNKVDHDDDHHLTLRPKSCSSKSNFIATSNSEAEPSLTLGLSRESYRQQVVKVPKNIGHNKVSSCEDLLEQTSPHSAISSFSSGRVKRERDLSCEEVEATEIERVSSRASDEEEDGTAARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGGVKGGASPKTPFSIAPKPHFFNPFANPSAAC 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1752 296 SMART halz 206 249 IPR003106 GO:0006355|GO:0043565
Ssu6g1752 296 CDD homeodomain 150 207 IPR001356 GO:0003677
Ssu6g1752 296 MobiDBLite consensus disorder prediction 32 46 - -
Ssu6g1752 296 SMART HOX_1 148 210 IPR001356 GO:0003677
Ssu6g1752 296 MobiDBLite consensus disorder prediction 26 46 - -
Ssu6g1752 296 PANTHER - 57 296 - -
Ssu6g1752 296 Coils Coil 212 242 - -
Ssu6g1752 296 ProSiteProfiles 'Homeobox' domain profile. 146 206 IPR001356 GO:0003677
Ssu6g1752 296 Gene3D - 154 204 - -
Ssu6g1752 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 57 296 - -
Ssu6g1752 296 Pfam Homeobox associated leucine zipper 206 240 IPR003106 GO:0006355|GO:0043565
Ssu6g1752 296 SUPERFAMILY Homeodomain-like 142 207 IPR009057 -
Ssu6g1752 296 Pfam Homeodomain 150 204 IPR001356 GO:0003677
Ssu6g1752 296 ProSitePatterns 'Homeobox' domain signature. 181 204 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1752 Ssu-Chr6 29792526 29793911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1752 2 296 Homeobox Transcription Factor Family AT4G37790 60.390 1.14e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu6g1752 Homeodomain 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1752 K09338 - gmx:100807123 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2607 2 85673381 85674798 Ssu6g1752 6 29792526 29793911 PCT