Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1745 ATGCGACTCCTCCTCCTCTCGTcgctcctcttcctcttcctcttcctccacTTTCACTTACTCAACGCAGCGCGCATCTCAGAGCACAGCGCGCTTCTCTCTTTCAAAGCATCCTCCGTAACCGACGACCCCACCGGCGCCCTCTCCTCGTGGAACTCCTCCACCCCGTATTGCACCTGGTTCGGCGTCACGTGCGACTCGCGGCGGCACGTGACCGCCCTGAACCTCACCTCGCTCTCCCTCTCCGGCACCCTCTCCGACGACCTCTCCCGCCTCCCGTTCCTCTCGCACCTCTCCCTGGCCGACAACAAGTTCTCCGGCCCCATCCCCGCCTCCTTCTCCGCCCTCTCCGCCCTCCGCTTCCTCAACCTCTCCAACAACGTCTTCAACGCCACCTTCCCCTCCCCCCTGTCTCAACTCGCCAACCTCCAAGTCCTCGACCTCTACAACAACAACATGACCGGTCCCCTCCCCCTCGCCGTCACCGCCATGCCCCTCCTCCGCCACCTCCACCTCGGCGGCAACTTCTTCTCCGGCCAGATCCCCCCGGACTACGGCGCCTGGACGCGCCTCCAGTACCTCGCCCTCTCCGGCAACGAGCTCGCCGGCGACATCCCGCCGGAGCTCGGCAACCTCACCGCGCTCCGCGAGCTCTACATTGGCTACTACAACACCTACTCCGGCGGCATCCCGCCGGAGATCGGAAACCTCTCCCAGCTCGTGCGCCTCGACGCCGCGTACTGCGGACTCTCCGGCGAGATTCCCGCCGAGCTCGGGAGGCTTCAGAACCTCGACACGCTGTTTCTCCAGGTGAATGCGCTTTTCGGCTCCCTGACTCCCGAACTGGGGAACCTGAAGAGTCTCAAGTCGTTGGACCTGTCCAACAACATGCTCTCCGGCGAGGTTCCGGCGAGTTTCGCCGAGCTGAAGAACCTCACGCTGTTGAACCTGTTCCGGAACAAGCTCCACGGCGCGATTCCCGAGTTCGTCGGAGGGTTACCGGCGCTGGAGGTGTTGCAGCTTTGGGAGAACAACTTCACGGGAAGCATTCCGCAGAGTTTGGGGAAGAACGGGAGACTCACGCTCGTTGATCTTTCTTCGAACAAGTTGACGGGGACTCTTCCTCCGGACATGTGTTACGGGAACCGTCTTGAGACTCTGATAGCTCTCGGGAATTTTCTGTTCGGCCCCATTCCCGATTCGTTTGGGAAGTGCGAGTCTCTGAGTAGGATACGCATGGGGGAGAACTTTCTGAATGGGTCTATTCCGATGGGCCTTTTTGGGCTTCCGAAGCTGACCCAAGTTGAGCTTCAGGACAATCTTCTCACGGGCCAGTTTCCGGAAGGCGGTTCCACTGCTGTTAATCTCGGTCAGATTAGTCTCTCTAATAACAAGCTTTCTGGGCCTTTGCCACCCTCCATTGGAAACTTCACCGGCATGCAGAAGCTTCTCCTTGATGGCAACAAGTTCTCGGGTCGAATCCCTCCTCAGATTGGGAGGCTGCAGCAGCTCTCTAAAATCGATTTTAGTCATAACAAGTTCTCCGGTCCCATTGCTCCCGAGATAAGTCAGTGCAAGCTTTTGACCTTCGTTGATCTCAACCGTAACGACCTCTCTGGCGAGATTCCAAACGAGATCACTTCTATGCGGATATTGAATTACCTCAACCTCTCAAGAAACCATCTAGTTGGGTCCATTCCAGGGTCCATTGCCTCTATGCAGAGTTTGACTTCTGTTGATTTTTCGTACAATAATCTCTCTGGTTTGGTGCCCGGCACCGGGCAATTCGGCTACTTTAACTACACTTCTTTCTTAGGGAACCCTGAACTATGTGGCCCTTATTTGGGTCCTTGTAAAGACGGGGTTGCCAATGGCCCTCGCCAACCTCGTGTTAAAGGccctctctcttcttctttgaaGCTCTTGTTAGTTATTGGGCTGCTTGTGTGCTCCATTGCATTTGCTGTTGCGGCAATAGTCAAAGCCCGGTCTTTGAAGAAGGCAAGCGAAGCACGTGCATGGAAATTGACCGCGTTCCAGCGTTTGGACTTCACTGTTGACGATGTTTTGGATTCCTTGAAGGAGGACAACATAATAGGGAAAGGAGGTGCCGGCATTGTGTACAAAGGGGCAATGCCCAATGGGGATCAGGTTGCTGTGAAGAGGTTACCCGCGATGAGCAGAGGATCTTCCCATGACCATGGTTTCAATGCGGAGATTCAGACGTTGGGGAGGATTCGACACAGACACATTGTTAGACTGCTGGGTTTCTGTTCAAACCACGAGACAAATCTGTTGGTGTATGAATACATGCCTAACGGGAGTTTGGGTGAGGTTCTTCATGGCAAGAAAGGGGGCCATTTGCATTGGGACACCAGGTATAAAATTGCTGTGGAGGCTGCCAAGGGCCTCTGCTATCTACACCATGACTGTTCACCGCTCATTGTCCATCGAGATGTTAAATCCAACAACATCCTTCTTGATTCCAATTTTGAAGCACATGTTGCTGACTTTGGGCTCGCTAAGTTCCTGCAAGATTCTGGAACATCTGAATGTATGTCTGCTATTGCCGGTTCATATGGATACATAGCTCCAGAGTACGCCTACACGTTGAAAGTGGATGAGAAAAGCGATGTCTATAGCTTCGGGGTGGTTCTTTTGGAGCTTGTAACAGGGAGGAAACCAGTTGGGGAATTTGGTGATGGTGTGGACATTGTGCAATGGGTGAGGAAAATGACAGACTCAAACAAGGACGGTGTTCTAAAAGTTCTTGATCCTAGACTTCCCTCTGTTCCACTTCATGAGGTGATGCATGTTTTCTATGTAGCCATGCTATGCGTTGAGGAACAGGCAGTGGAACGACCAACTATGCGTGAAGTTGTTCAAATTCTGACCGAGCTTCCAAAGCCACCAAGCTCAAAACAGGGAGACTTAACAATCACGGAGACCTCTTTGCCATCATCAAACAGTTTAGAGTCTCCAACCACGGCATCTAAGGAACCTAAAGATAATCAACACCCTCCTCAGTCGCCACCACCCGATCTTCTTAGCATTTGA 3057 0.527 MRLLLLSSLLFLFLFLHFHLLNAARISEHSALLSFKASSVTDDPTGALSSWNSSTPYCTWFGVTCDSRRHVTALNLTSLSLSGTLSDDLSRLPFLSHLSLADNKFSGPIPASFSALSALRFLNLSNNVFNATFPSPLSQLANLQVLDLYNNNMTGPLPLAVTAMPLLRHLHLGGNFFSGQIPPDYGAWTRLQYLALSGNELAGDIPPELGNLTALRELYIGYYNTYSGGIPPEIGNLSQLVRLDAAYCGLSGEIPAELGRLQNLDTLFLQVNALFGSLTPELGNLKSLKSLDLSNNMLSGEVPASFAELKNLTLLNLFRNKLHGAIPEFVGGLPALEVLQLWENNFTGSIPQSLGKNGRLTLVDLSSNKLTGTLPPDMCYGNRLETLIALGNFLFGPIPDSFGKCESLSRIRMGENFLNGSIPMGLFGLPKLTQVELQDNLLTGQFPEGGSTAVNLGQISLSNNKLSGPLPPSIGNFTGMQKLLLDGNKFSGRIPPQIGRLQQLSKIDFSHNKFSGPIAPEISQCKLLTFVDLNRNDLSGEIPNEITSMRILNYLNLSRNHLVGSIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFGYFNYTSFLGNPELCGPYLGPCKDGVANGPRQPRVKGPLSSSLKLLLVIGLLVCSIAFAVAAIVKARSLKKASEARAWKLTAFQRLDFTVDDVLDSLKEDNIIGKGGAGIVYKGAMPNGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKDGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPSSKQGDLTITETSLPSSNSLESPTTASKEPKDNQHPPQSPPPDLLSI 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1745 1018 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Ssu6g1745 1018 SUPERFAMILY Protein kinase-like (PK-like) 686 964 IPR011009 -
Ssu6g1745 1018 MobiDBLite consensus disorder prediction 968 1004 - -
Ssu6g1745 1018 Gene3D Phosphorylase Kinase; domain 1 657 770 - -
Ssu6g1745 1018 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 1005 - -
Ssu6g1745 1018 SMART LRR_typ_2 573 596 IPR003591 -
Ssu6g1745 1018 SMART LRR_typ_2 164 188 IPR003591 -
Ssu6g1745 1018 SMART LRR_typ_2 309 332 IPR003591 -
Ssu6g1745 1018 SMART LRR_typ_2 116 140 IPR003591 -
Ssu6g1745 1018 SMART LRR_typ_2 501 525 IPR003591 -
Ssu6g1745 1018 SMART LRR_typ_2 333 357 IPR003591 -
Ssu6g1745 1018 SMART LRR_typ_2 92 115 IPR003591 -
Ssu6g1745 1018 SMART LRR_typ_2 358 381 IPR003591 -
Ssu6g1745 1018 SMART LRR_typ_2 285 308 IPR003591 -
Ssu6g1745 1018 Gene3D Ribonuclease Inhibitor 25 184 IPR032675 -
Ssu6g1745 1018 MobiDBLite consensus disorder prediction 968 1018 - -
Ssu6g1745 1018 Gene3D Ribonuclease Inhibitor 331 623 IPR032675 -
Ssu6g1745 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Ssu6g1745 1018 Gene3D Transferase(Phosphotransferase) domain 1 771 981 - -
Ssu6g1745 1018 SUPERFAMILY L domain-like 357 618 - -
Ssu6g1745 1018 Pfam Leucine rich repeat 263 322 IPR001611 GO:0005515
Ssu6g1745 1018 SMART serkin_6 693 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1745 1018 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 1005 - -
Ssu6g1745 1018 Pfam Protein tyrosine and serine/threonine kinase 695 964 IPR001245 GO:0004672|GO:0006468
Ssu6g1745 1018 Gene3D Ribonuclease Inhibitor 262 330 IPR032675 -
Ssu6g1745 1018 Gene3D Ribonuclease Inhibitor 185 261 IPR032675 -
Ssu6g1745 1018 ProSiteProfiles Protein kinase domain profile. 693 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1745 1018 SUPERFAMILY RNI-like 74 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1745 Ssu-Chr6 29628297 29631908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1745 19 994 Receptor kinase-like Gene Family AT5G65700 80.671 0.0 1594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu6g1745 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1745 - - gmx:100499646 1807.34