Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1743 ATGGGATTAACATATTCACACGTGTCTGTAGAGACACGGGTACGAAGCGTGTACGTGGCCCTTTATAAAACACTTGAGTTTCACCCATTTGTTGCAACGTTGCTCCCATCGACCAACTTTGAAAACAACAAACACTTCATCATCTCTGGGCCTTCAACCTTTCTTCAATCAAGGGTGTCCCATACCAATAGAAGCGAGCTAGGTGAGGATGACGCAAATTTCGTCGACCATGGAATAGAGGACCCCACTTTGTTTCATCAATATCCGATGGATCCTTTTGCATTCCAGCTCGATGATTTTGACTTTGAGTCCTTCTCCGCGTCCCCAAAAAGCTCTTCCTCTCACAAGCGTTTCAACTCCGAAAGCACACAAAACTCCTTCCTCACTCAAAGTCCTGAACAGTCTGTTGCCCCATCAAGACCAACCAAGCAACCCAAGATTATGAGTACCTGGAGTGCTTATGGTAGTGACACGATGGCTCCCaaggcttcttcttcttcatcctcCAAAATCATCTCTTTTGAGCACTCCAATGCATCTTCGGTTACTTCCCAACAATTCTACAACCTGGATGCTGCAAAAGTGAAGAAGCCTAAAATTGAAACCGGGTATGGTGAAAACTTGGATTTTTCAGCTGCGGCTTCTCAAGGTGCCTATGACAACAATAGGTTTTTAGACTATGATAAACGAGGGAAAAAGGCTGCAACTATATTGGCTAGAAACCCAACCCAAGCTCAAGATCACGTAATAGCCGAAAGAAAACGAAGGGAAAAGCTCAGCCAGAGGTTCATTGCTCTTTCGGCCATTGTTCCTGGACTCAAGAAGCTGGACAAGGCTACCGTCTTGGAAGATGCTATAAAGTACGTGAAACAACTACAGGAACGGGTAAAGACTCTGGAGGAACAAGCGGTGGATAAAACAATTGAATCAGCAGTCTTTGTAAAGAGATCTGTTGTCTTCGCCGGCGATGATAGCTCCTCCTCCAATGAAAACTCGGACCAGTCACTCCCCGAAATCGAAGCAAGAATTTCTGGTAAAGAAGTACTAATCAGAATCCACAGCGATAAACACAGTGGGAAGGCGGCTTCCATACTAAGGGCATTAGAGAAGCATCATCTCACAGTTCAGGGTAGCAGCTTTTTGCCCTTTGGGAATAACACTCTTGACATAACTATTGTTGCTCAGATGAACGAGGACTACTGCTTAAAGGCAAAGGATCTCATCAGAAGCTTAAGTCAGTGTTTGAGGCAGCTTTGA 1257 0.4407 MGLTYSHVSVETRVRSVYVALYKTLEFHPFVATLLPSTNFENNKHFIISGPSTFLQSRVSHTNRSELGEDDANFVDHGIEDPTLFHQYPMDPFAFQLDDFDFESFSASPKSSSSHKRFNSESTQNSFLTQSPEQSVAPSRPTKQPKIMSTWSAYGSDTMAPKASSSSSSKIISFEHSNASSVTSQQFYNLDAAKVKKPKIETGYGENLDFSAAASQGAYDNNRFLDYDKRGKKAATILARNPTQAQDHVIAERKRREKLSQRFIALSAIVPGLKKLDKATVLEDAIKYVKQLQERVKTLEEQAVDKTIESAVFVKRSVVFAGDDSSSSNENSDQSLPEIEARISGKEVLIRIHSDKHSGKAASILRALEKHHLTVQGSSFLPFGNNTLDITIVAQMNEDYCLKAKDLIRSLSQCLRQL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1743 418 PANTHER BHLH TRANSCRIPTION FACTOR 77 417 - -
Ssu6g1743 418 Coils Coil 282 309 - -
Ssu6g1743 418 Gene3D - 237 307 IPR036638 GO:0046983
Ssu6g1743 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Ssu6g1743 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 247 302 IPR036638 GO:0046983
Ssu6g1743 418 Pfam Helix-loop-helix DNA-binding domain 246 293 IPR011598 GO:0046983
Ssu6g1743 418 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 77 417 - -
Ssu6g1743 418 MobiDBLite consensus disorder prediction 109 146 - -
Ssu6g1743 418 SMART finulus 249 298 IPR011598 GO:0046983
Ssu6g1743 418 CDD bHLH_AtNAI1_like 245 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1743 Ssu-Chr6 29567668 29570325 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1743 143 415 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.049 6.22e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g1743 HLH 3.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1743 - - gmx:100798011 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2623 2 85922942 85924402 Ssu6g1743 6 29567668 29570325 PCT