Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1742 ATGATGGAGGAATTAAACAAACCAATGGACGCATCAGCAGCCAGCTGGTTATCCGATTTGgAAATGGATGATTACAATTTATTTCCAGATGAATGTCCCCTAAACTTGTTTGATGTTGATGACCAAGAGTTTCTTTCGCATGACATAGCTAGTGCCCTGCAAGAACAGACACAGACCATACAGCAATCTTTGTCTTCAGAGTGTCCTTCCAAAACTAGGAGCAACTCATCCACCGATGAAACCAGTTTTGACTTTGAGAGACCAGCCAAGTTGCTGAAAACGACAAGCGGTAGTTGTAACTCTGACTCATCCATCATCACTAATAGTCTTTCACCCAAACTTTCCCCATCGTCTTCCTTCTCCTCCTTTCAGTCTCAGATTCTCTCTTTTGACAACCCAAACTCATCCCCTCCCAACACCACCCAGTTTTATGGGTTTGACTGTACCTTAAACCCAGCACAGAACGAGATGGGGTCTGTCTCAGTGCCCCAATTGGGGAAACCACGTTTCCCAACTCAAACCCCAAAAGGGTCcccaaaaaatcaaaactttgaAACAAAACCCTCACAGGGTAAGAGGTCTCCGGCTCACGCTCAGGATCACATCCTGGCCGAGAGAAAGCGAAGAGAGAAGCTCAGCCAGAGTTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCTGTGTTAGGGGACGCAATCAAATACGTCAAAGAGCTTAAAGAGCGGTTAGCGGTGCTGGAAGAGCAGAGCAAGAAAACAAGGACAGAATCGGTGGTGGCTCTGAACAAACCAGACCTCTCTGGCGATGATGATTCCTCCTCATGTGATGAGAGCATTGATGCTGATAGTGTCAGTGAATCACTGTTTCAAGTGGAAGCGAGAGTGTCAGGGAAGGAGATGCTGCTTCGGATCCACTGCCAGAAGCAAAAGGGTCTTCTGGTCAAATTACTGGCCGAGATTCAGAGTTATAACTTATTCGTTGTTAATAGCAGTGTCTTACCCTTCGGTGGTTCAATCCTTGACATTACCATAATTGCTCAGGAACCAGATGATTACAGTTTAATTGGTCAATCAGACATAAATGTGGATGATGTAAATGGAAGTTTAGCATGTCATCATGATATAGCCACGGCATTAGAGGAGAACCAGCAAAGCTCATTTTCCACGGAGAGTCACTCTTCAGTGACTGAGAGTGGCTTAGAGAGGCCTTTCAAGTTACTCAAGACATGCACTTCAAACTCTGACAAGACAGAGCAACTCTCACAAAAGACAGTTTCTACTCCCTGCTCCTATATTCTCTCCTTCGACAACACGAATCCACCACCAATAAAGGCTGAATCGGCCTCGAAGCAAGGAACCAAGGTTGTGAATCGTGGGAAAGCTTTGCCTTCAAAGAATGAACCAAGACGCGTTACTCAGGAGAGCAAGAAAATGAGCTCATTGGCCAGATCTTGTCATCACACACAAGATCACATAATTGctgagagaatgaggagagaAAAGATTAGCCAGCAGTTCATAGCCCTTTCTGCCCTTATTCCAGACCTGAAAaagATGGACAAGGTCTCTGTGTTGGGGGAGGCTATAGGGTATGTGAAACAGCTGAAGGAGCAAGTGAAGCTGCTGGAGGAGCAGACCAGAAGGAAAAGCGAGGAATCGGTGGTGCTTAGGAAGAAATCTCAGGTCTGTGCTGCGGACGAAGATGTCTCAGACACTTCGTCAAATTCGTGTGAGTACGGAAACTCCGATGATccttcaaaaacaaatttgtcaCTGCCAGAGGTTGAAGCAAGGGTATCAAAGAAGAACGTGCTGATTCGAATCCTCTGCGAGAAAGAAAAGGCAGTTTTGGTGAACATAtttagagagatagagaaactCCATCTCTCAGTCATCAATAGCAGCGCCTTGTCTTTCGGTTCCTCTGTTCTGGACACAACCATCGTGGCCGAgATGGAGGATGAATTCAACATGAGCGTGAAGGAACTGGCAAGAAACCTCAGAGTAGGACTGATGCAATTTGTGTAG 2046 0.4423 MMEELNKPMDASAASWLSDLEMDDYNLFPDECPLNLFDVDDQEFLSHDIASALQEQTQTIQQSLSSECPSKTRSNSSTDETSFDFERPAKLLKTTSGSCNSDSSIITNSLSPKLSPSSSFSSFQSQILSFDNPNSSPPNTTQFYGFDCTLNPAQNEMGSVSVPQLGKPRFPTQTPKGSPKNQNFETKPSQGKRSPAHAQDHILAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKELKERLAVLEEQSKKTRTESVVALNKPDLSGDDDSSSCDESIDADSVSESLFQVEARVSGKEMLLRIHCQKQKGLLVKLLAEIQSYNLFVVNSSVLPFGGSILDITIIAQEPDDYSLIGQSDINVDDVNGSLACHHDIATALEENQQSSFSTESHSSVTESGLERPFKLLKTCTSNSDKTEQLSQKTVSTPCSYILSFDNTNPPPIKAESASKQGTKVVNRGKALPSKNEPRRVTQESKKMSSLARSCHHTQDHIIAERMRREKISQQFIALSALIPDLKKMDKVSVLGEAIGYVKQLKEQVKLLEEQTRRKSEESVVLRKKSQVCAADEDVSDTSSNSCEYGNSDDPSKTNLSLPEVEARVSKKNVLIRILCEKEKAVLVNIFREIEKLHLSVINSSALSFGSSVLDTTIVAEMEDEFNMSVKELARNLRVGLMQFV 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1742 681 Coils Coil 531 558 - -
Ssu6g1742 681 SMART finulus 202 251 IPR011598 GO:0046983
Ssu6g1742 681 SMART finulus 498 547 IPR011598 GO:0046983
Ssu6g1742 681 MobiDBLite consensus disorder prediction 576 595 - -
Ssu6g1742 681 Pfam Helix-loop-helix DNA-binding domain 496 542 IPR011598 GO:0046983
Ssu6g1742 681 Pfam Helix-loop-helix DNA-binding domain 200 245 IPR011598 GO:0046983
Ssu6g1742 681 Gene3D - 188 262 IPR036638 GO:0046983
Ssu6g1742 681 MobiDBLite consensus disorder prediction 464 484 - -
Ssu6g1742 681 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 262 IPR036638 GO:0046983
Ssu6g1742 681 CDD bHLH_AtNAI1_like 197 269 - -
Ssu6g1742 681 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 354 680 - -
Ssu6g1742 681 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 9 353 - -
Ssu6g1742 681 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 496 560 IPR036638 GO:0046983
Ssu6g1742 681 MobiDBLite consensus disorder prediction 162 200 - -
Ssu6g1742 681 MobiDBLite consensus disorder prediction 61 84 - -
Ssu6g1742 681 PANTHER BHLH TRANSCRIPTION FACTOR 354 680 - -
Ssu6g1742 681 PANTHER BHLH TRANSCRIPTION FACTOR 9 353 - -
Ssu6g1742 681 Coils Coil 235 262 - -
Ssu6g1742 681 MobiDBLite consensus disorder prediction 576 596 - -
Ssu6g1742 681 MobiDBLite consensus disorder prediction 61 82 - -
Ssu6g1742 681 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 492 541 IPR011598 GO:0046983
Ssu6g1742 681 MobiDBLite consensus disorder prediction 174 193 - -
Ssu6g1742 681 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Ssu6g1742 681 MobiDBLite consensus disorder prediction 469 484 - -
Ssu6g1742 681 Gene3D - 492 571 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1742 Ssu-Chr6 29508549 29538032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1742 481 681 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.254 8.40e-53 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu6g1742 HLH 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1742 - - gmx:100788128 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2624 2 85944031 85945826 Ssu6g1742 6 29508549 29538032 PCT